headers
Mike Cariaso | 29 May 2007 21:44
Picon
Favicon

Re: ERROR IN mpiFORMATDB?

Not a solution, but a next step. Cut your fasta into 2 parts, and see which reproduces the error. Repeat this a few more times until you can get a smaller file that reproduces the error.
 
--
Mike Cariaso * Bioinformatics Software * http://www.cariaso.com


----- Original Message ----
From: Daniel Xavier de Sousa <danielucg-/E1597aS9LRfJ/NunPodnw@public.gmane.org>
To: mpiblast-users-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@public.gmane.org
Sent: Tuesday, May 29, 2007 11:08:56 AM
Subject: [Mpiblast-users] ERROR IN mpiFORMATDB?

Hi for all,

 

Please, I have a problem with mpiblast, in mpiFormatdb.

 

When I process mpiFORMATDB with nt database, I get this out error:

 

=>    [formatdb] ERROR: Failed to create index.  Possibly a gi included more than once in the database.

 

When I executed just formatdb (from ncbi) there wasn't error message.

I have confirmed and there aren’t repted GI numbers in nt database.

 

Please, anyone have one suggestion?

 

Thank you so much.

 

Daniel


 
*****************************************************************
* Daniel Xavier de Sousa *
* Mestrando em Informática - PUC-Rio *
* E-MAIL : dsousaARROBAinf.puc-rio.br *
* Fone : +55 21 35271500 - 4543 *
****************************************************************

 

__________________________________________________
Fale com seus amigos de graça com o novo Yahoo! Messenger
http://br.messenger.yahoo.com/
-------------------------------------------------------------------------
This SF.net email is sponsored by DB2 Express
Download DB2 Express C - the FREE version of DB2 express and take
control of your XML. No limits. Just data. Click to get it now.
http://sourceforge.net/powerbar/db2/
_______________________________________________
Mpiblast-users mailing list
Mpiblast-users-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@public.gmane.org
https://lists.sourceforge.net/lists/listinfo/mpiblast-users

-------------------------------------------------------------------------
This SF.net email is sponsored by DB2 Express
Download DB2 Express C - the FREE version of DB2 express and take
control of your XML. No limits. Just data. Click to get it now.
http://sourceforge.net/powerbar/db2/
_______________________________________________
Mpiblast-users mailing list
Mpiblast-users@...
https://lists.sourceforge.net/lists/listinfo/mpiblast-users
Permalink | Reply |

Gmane