1 Mar 2006 03:41
WGS sequences through Bio::DB::GenBank
Chris Fields <cjfields <at> uiuc.edu>
2006-03-01 02:41:08 GMT
2006-03-01 02:41:08 GMT
I know that a recent post showed that you could retrieve CONTIG sequences from GenBank files fairly easily: http://bioperl.org/pipermail/bioperl-l/2006-February/020891.html I'm driving myself a bit buggy looking for this, and I may be blind to it, but can the same be done with WGS files? I've tried Bio::DB::GenBank and a few other Bio::DB* modules to see if it's been implemented but haven't had any luck yet. I may try getting around it using Bio::DB::Query::GenBank, but just trying to find a more direct route. Christopher Fields Postdoctoral Researcher - Switzer Lab Dept. of Biochemistry University of Illinois Urbana-Champaign
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