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Gmane
From: Chris Fields <cjfields <at> uiuc.edu>
Subject: WGS sequences through Bio::DB::GenBank
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Wednesday 1st March 2006 02:41:08 UTC (over 10 years ago)
I know that a recent post showed that you could retrieve CONTIG sequences
from GenBank files fairly easily:

http://bioperl.org/pipermail/bioperl-l/2006-February/020891.html

I'm driving myself a bit buggy looking for this, and I may be blind to it,
but can the same be done with WGS files?  I've tried Bio::DB::GenBank and a
few other Bio::DB* modules to see if it's been implemented but haven't had
any luck yet.  I may try getting around it using Bio::DB::Query::GenBank,
but just trying to find a more direct route.

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign
 
CD: 18ms