6 Oct 23:57
Re: existing support for location w/ offset?
From: Sendu Bala <bix <at> sendu.me.uk>
Subject: Re: existing support for location w/ offset?
Newsgroups: gmane.comp.lang.perl.bio.general
Date: 2008-10-06 21:57:53 GMT
Subject: Re: existing support for location w/ offset?
Newsgroups: gmane.comp.lang.perl.bio.general
Date: 2008-10-06 21:57:53 GMT
George Hartzell wrote: > I have a community that likes to refer to positions as offsets, > e.g. 100 bases upstream of the beginning of the exon, or 5 bases after > the splice site.... They think of it as 34532+2 or 23451-23 (funny, > if you hold down the shift key when you type that, you get @#$%!-@#, > which is how I feel about it...). > > Are there any exising Bio::Location classes that would make keeping > track of this info easier? It might not be at all appropriate, and hopefully there's better solutions, but for relative positioning stuff you can try playing with Bio::Map stuff.
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