Jason Stajich | 11 May 21:07 2012
Picon

small project

HMMER folks have contributed a module to BioJava to simplify submission of a protein sequence to the HMMER
RESTful API
http://xfam.wordpress.com/2012/05/09/pdb-pfam-mapping/
http://hmmer.janelia.org/help/api

Perhaps a BioPerl similar module that wraps up the existing code to submit Bio::Seq objects similar to
other Bio::DB:: or probably better to do Bio::Tools interfaces for interaction with remote
webservices. The code to add this to bioperl is basically already written - the question would be if you
wanted to populate a Bio::Search object with the XML results (Writing a parser for the XML)

http://hmmer.janelia.org/help/api#sending

Jason

Jason Stajich
jason.stajich <at> gmail.com
jason <at> bioperl.org

Gmane