Antonio Nhani Jr | 27 Sep 10:39 2012

Clustalw alignment parsing

Hi All,

I need to parse a several seqs clustalw alignment file, searching for regions to design primers
(preference for not degenerated).
The amplified region must have base(s) differences, to identify each seq.
Haven't found a method in Bio::SimpleAlignIO to do this…

Any hint?

All the very best,