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Gmane
From: Rondon Neto <rondonbio <at> yahoo.com.br>
Subject: extract nt positions from Hit
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Thursday 4th October 2012 21:30:37 UTC (over 4 years ago)
Hi there!
I would like to know if there is a way to recover the nucleotides and their
positions in the database sequences that are divergent from query, by
Search::IO.
What I need are:
- the nucleotides
- their positions in DB sequences
- the positions of mismatches and gaps that they are related.

thank you very much,

Rondon
 
CD: 3ms