Rondon Neto | 4 Oct 23:30 2012

extract nt positions from Hit

Hi there!
I would like to know if there is a way to recover the nucleotides and their positions in the database
sequences that are divergent from query, by Search::IO.
What I need are:
- the nucleotides
- their positions in DB sequences
- the positions of mismatches and gaps that they are related.

thank you very much,