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Gmane
From: Jason Stajich <jason.stajich <at> gmail.com>
Subject: Re: extract nt positions from Hit
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Friday 5th October 2012 16:12:54 UTC (over 4 years ago)
This sounds a little like homework - did you try to read the SearchIO HOWTO
and give the example code in there a whirl?
http://bioperl.org/wiki/HOWTO:SearchIO

On Oct 4, 2012, at 2:30 PM, Rondon Neto  wrote:

> Hi there!
> I would like to know if there is a way to recover the nucleotides and
their positions in the database sequences that are divergent from query, by
Search::IO.
> What I need are:
> - the nucleotides
> - their positions in DB sequences
> - the positions of mismatches and gaps that they are related.
> 
> thank you very much,
> 
> Rondon
> _______________________________________________
> Bioperl-l mailing list
> [email protected]
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Jason Stajich
[email protected]
[email protected]
 
CD: 3ms