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Gmane
From: Dan Nasko <dan.nasko <at> gmail.com>
Subject: Re: Update of SeqIO:: fastq Module for PacBio
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Monday 8th October 2012 17:45:00 UTC (over 4 years ago)
Peter,

One of the folks at PacBio got back to me this weekend saying that the
FASTQ encoding bug will be fixed in an upcoming software release.

When I asked him how they were fixing it he said "The QVs are now being
clipped at 89." Needless to say I'm extremely skeptical of these quality
values.

Dan

On Sep 30, 2012, at 6:38 PM, Peter Cock  wrote:

> Hi Dan,
> 
> Did you get any reply from PacBio?
> 
> Re: http://lists.open-bio.org/pipermail/bioperl-l/2012-September/036778.html
> 
> Thanks,
> 
> Peter
> 
> On Thu, Sep 20, 2012 at 7:00 PM, Dan Nasko  wrote:
>> Peter,
>> 
>> Here is Frank Boellmann's email, he's a Field Application Specialist and
>> Bioinformatician at PacBio who is generally great at resolving these
issues:
>> [email protected]
>> 
>> I've gone ahead and contacted another one of their software engineers
and am
>> waiting for a response from him.
>> 
>> Dan
 
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