30 Oct 2012 00:25
Re: Bio::DB::Fasta changes
Florent Angly <florent.angly <at> gmail.com>
2012-10-29 23:25:05 GMT
2012-10-29 23:25:05 GMT
Hi all, I resolved the issue, i.e. restored the ability to return a list of IDs (or a single scalar one), added some documentation to make it explicit and added unit tests: https://redmine.open-bio.org/issues/3389 Florent On 29/10/12 20:38, Dave Howorth wrote: > Florent Angly wrote: >> I suspect that this bug report you cited unveiled a corner case that was >> not covered by the tests. I'll assign the bug to myself and investigate. > It looks to me like the previous code and documentation don't match. The > CPAN docs, the git docs and the git code all appear to agree that there > is a single scalar result. But the CPAN code implements an array result. > > >From the sound of it, people have been relying on an undocumented > feature. But there was a specific change in the code behaviour. As Chris > says, it seems like some discussion of the correct resolution would be > sensible. > > Cheers, Dave > _______________________________________________ > Bioperl-l mailing list > Bioperl-l <at> lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l
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