Brian Osborne | 21 Nov 00:52 2012
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Re: Ask for help about Bioperl

胡江,

You're going to have show us your code, we can't help you just by seeing the error messages. Show us the input
file as well, or the beginning of it.

Brian O.

On Nov 6, 2012, at 2:38 AM, 胡江 <mooldhu <at> gmail.com> wrote:

> hi,
> when I use bioperl ,it report errors like this :---------------------
> WARNING ---------------------
> MSG: sequence '1' doesn't validate, mismatch is )81,95,0(,::
> ---------------------------------------------------
> Error providing evidence type: GeneModel
> The error was:
> 
> ------------- EXCEPTION: Bio::Root::Exception -------------
> MSG: Attempting to set the sequence '1' to
> [)81hvf95x0(DSTD=qeSrytkiyP::oiV] which does not look healthy
> STACK: Error::throw
> STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:486
> STACK: Bio::PrimarySeq::seq /usr/share/perl5/Bio/PrimarySeq.pm:285
> STACK: Bio::PrimarySeq::new /usr/share/perl5/Bio/PrimarySeq.pm:239
> STACK: Bio::PrimarySeqI::revcom /usr/share/perl5/Bio/PrimarySeqI.pm:383
> 
> 
> but,I am sure that the input file only cotain [ATGCN],I also try to use
> another sequences ,but the errors are the same.my bioperl is Bioperl-live
> 1.006902;
> 
> -- 
> 胡江
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l <at> lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

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