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Gmane
From: Brian Osborne <bosborne11 <at> verizon.net>
Subject: Re: Ask for help about Bioperl
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Tuesday 20th November 2012 23:52:00 UTC (over 4 years ago)
胡江,

You're going to have show us your code, we can't help you just by seeing
the error messages. Show us the input file as well, or the beginning of it.

Brian O.


On Nov 6, 2012, at 2:38 AM, 胡江  wrote:

> hi,
> when I use bioperl ,it report errors like this :---------------------
> WARNING ---------------------
> MSG: sequence '1' doesn't validate, mismatch is )81,95,0(,::
> ---------------------------------------------------
> Error providing evidence type: GeneModel
> The error was:
> 
> ------------- EXCEPTION: Bio::Root::Exception -------------
> MSG: Attempting to set the sequence '1' to
> [)81hvf95x0(DSTD=qeSrytkiyP::oiV] which does not look healthy
> STACK: Error::throw
> STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:486
> STACK: Bio::PrimarySeq::seq /usr/share/perl5/Bio/PrimarySeq.pm:285
> STACK: Bio::PrimarySeq::new /usr/share/perl5/Bio/PrimarySeq.pm:239
> STACK: Bio::PrimarySeqI::revcom /usr/share/perl5/Bio/PrimarySeqI.pm:383
> 
> 
> but,I am sure that the input file only cotain [ATGCN],I also try to use
> another sequences ,but the errors are the same.my bioperl is Bioperl-live
> 1.006902;
> 
> -- 
> 胡江
> 
> _______________________________________________
> Bioperl-l mailing list
> [email protected]
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
 
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