Home
Reading
Searching
Subscribe
Sponsors
Statistics
Posting
Contact
Spam
Lists
Links
About
Hosting
Filtering
Features Download
Marketing
Archives
FAQ
Blog
 
Gmane
From: Francesco Musacchia <francescomusacchia <at> gmail.com>
Subject: Slowness of Bioperl with GFF3 database access
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Wednesday 28th November 2012 10:27:16 UTC (over 3 years ago)
Hi all,
I have a big problem with using GFF3 database with BioPerl. This is not a 
question about what is the way to write some bioperl code. I'm experiencing

that when I have to do a lot of accessess on a GFF database (with
Bio:DB::SeqFeature::Store) 
the slowness increase until my script can stay running for more than a day.

How can I solve it? Or it cannot be done?

Thanks a lot!
 
CD: 3ms