Francesco Musacchia | 28 Nov 11:27 2012

Slowness of Bioperl with GFF3 database access

Hi all,
I have a big problem with using GFF3 database with BioPerl. This is not a 
question about what is the way to write some bioperl code. I'm experiencing 
that when I have to do a lot of accessess on a GFF database (with Bio:DB::SeqFeature::Store) 
the slowness increase until my script can stay running for more than a day.

How can I solve it? Or it cannot be done?

Thanks a lot!