31 Dec 2012 07:46
Help in getting organism names of the nucleotide entries.
Sanket Desai <sanketd <at> isquareit.ac.in>
2012-12-31 06:46:41 GMT
2012-12-31 06:46:41 GMT
Hello, With respect to the post: http://bio.perl.org/pipermail/bioperl-l/2009-December/031831.html When used for nucleotide database it gives the following error: --------------------- WARNING --------------------- MSG: The -email parameter is now required, per NCBI E-utilities policy --------------------------------------------------- --------------------- WARNING --------------------- MSG: No linksets returned --------------------------------------------------- --------------------- WARNING --------------------- MSG: The -email parameter is now required, per NCBI E-utilities policy --------------------------------------------------- ------------- EXCEPTION: Bio::Root::Exception ------------- MSG: NCBI esummary fatal error: Empty id list - nothing todo STACK: Error::throw STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:472 STACK: Bio::Tools::EUtilities::parse_data /usr/share/perl5/Bio/Tools/EUtilities.pm:382 STACK: Bio::Tools::EUtilities::next_DocSum /usr/share/perl5/Bio/Tools/EUtilities.pm:964 STACK: Bio::DB::EUtilities::next_DocSum /usr/share/perl5/Bio/DB/EUtilities.pm:914 STACK: getOrgNameFrmAccession.pl:29 ----------------------------------------------------------- Please suggest the relevant changes in the above script to make it work for the nucleotide entries also. Thanks in advance, Regards, Sanket
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