2 Jan 2013 20:44
Converting blast+ output to gff (with gaps)
Jim Hu <jimhu <at> tamu.edu>
2013-01-02 19:44:56 GMT
2013-01-02 19:44:56 GMT
I assume this has already been done many times, but I can't seem to find it on bioperl.org or via google. I'm looking for a script that will take one of the blast+ outformats that includes the positions of gaps and mismatches, and create gff with appropriate subfeatures. Thanks, Jim ===================================== Jim Hu Professor Dept. of Biochemistry and Biophysics 2128 TAMU Texas A&M Univ. College Station, TX 77843-2128 979-862-4054
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