Home
Reading
Searching
Subscribe
Sponsors
Statistics
Posting
Contact
Spam
Lists
Links
About
Hosting
Filtering
Features Download
Marketing
Archives
FAQ
Blog
 
Gmane
From: Jim Hu <jimhu <at> tamu.edu>
Subject: Converting blast+ output to gff (with gaps)
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Wednesday 2nd January 2013 19:44:56 UTC (over 3 years ago)
I assume this has already been done many times, but I can't seem to find it
on bioperl.org or via google.

I'm looking for a script that will take one of the blast+ outformats that
includes the positions of gaps and mismatches, and create gff with
appropriate subfeatures.  

Thanks,

Jim
=====================================
Jim Hu
Professor
Dept. of Biochemistry and Biophysics
2128 TAMU
Texas A&M Univ.
College Station, TX 77843-2128
979-862-4054
 
CD: 4ms