Adam Witney | 17 Jan 18:33 2013
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Re: drawing genome comparison cross linking tracks?


Thanks Chris. I hadn't seen SynBrowse before, looks good.

But I would like to do this without all the database/webserver overhead, 
I have a perl script that can interact with a gbrowse_syn database to 
generate images ie no webserver, I just need to separate out the 
database stuff now.

Thanks again

Adam

On 17/01/2013 13:37, Fields, Christopher J wrote:
> Gbrowse_syn, SynBrowse, and others can do this, but there isn't a pre-packaged way of drawing this that I
know of analogous to Biopython's.  It would be nice to have, though.
>
> chris
>
> On Jan 17, 2013, at 5:45 AM, Adam Witney <awitney <at> sgul.ac.uk> wrote:
>
>> Hi,
>>
>> I would like to produces graphics as shown in this section (cross linking between genome tracks) [scroll
down a little to see the pictures]:
>>
>> http://www.biopython.org/DIST/docs/tutorial/Tutorial.html#htoc211
>>
>> but using perl. Can Bio::Graphics do this? I can only find Gbrowse_syn, but this works within a web
browser, I would like to generate these diagrams from a stand alone script. If not does anyone know any perl
libraries that can be used to show genome comparisons?
>>
>> Thanks
>>
>> Adam
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Gmane