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Gmane
From: jobu <buschj <at> hhu.de>
Subject: Parsing Blast-Report extracting "Features flanking .."
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Saturday 19th January 2013 16:12:54 UTC (over 3 years ago)
Dear List,

I've got quite a lot of  hits from blasting against nt-database that state:

"Features flanking this part of subject sequence: "

where the subject-accession only will give information about complete
genomic sequences,
the detailed information inside the "Features flanking" section of the
HSP about annotations of upstream and downstream elements would be what
I need.

Is there any elegant way to make Bio::SearchIO do this job for me?

greetings
Jochen
 
CD: 3ms