22 Jan 2013 22:45
Bio::DB::Taxonomy example
Shyam Saladi <saladi1 <at> illinois.edu>
2013-01-22 21:45:23 GMT
2013-01-22 21:45:23 GMT
Hi, There is an example on how to use Bio::DB::Taxonomy at http://www.bioperl.org/wiki/Module:Bio::DB::Taxonomy I tried the script but could not get it to work properly. After looking through the documentation it seems that my <at> extant_children = grep { $_->rank eq 'species' } $node->get_all_Descendents; should instead be my <at> extant_children = grep { $_->rank eq 'species' } $db->get_all_Descendents($node) I found this solves the problem for me. If my fix is in fact correct, an admin may want to change the example script online. Thanks, Shyam **
RSS Feed