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Gmane
From: Thiago Venancio <thiago.venancio <at> gmail.com>
Subject: Re: bioperl-ext
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Thursday 31st January 2013 17:25:12 UTC (over 3 years ago)
Solved using the solution posted by jmf here :
https://groups.google.com/forum/?fromgroups=#!searchin/bioperl-l/bioperl-ext/bioperl-l/FgJo_g8UQE8/FB1DEjJkTooJ

Which I found after posting.

T


On Thursday, January 31, 2013 3:10:39 PM UTC-2, Thiago Venancio wrote:
>
> Hi all, 
>
> I am trying to install bioperl-ext and the compilation gives me the
error: 
>
> /usr/bin/ld: libs/libsw.a(aln.o): relocation R_X86_64_32 against
`.rodata' 
> can not be used when making a shared object; recompile with -fPIC 
> libs/libsw.a: could not read symbols: Bad value 
> collect2: ld returned 1 exit status 
> make[1]: *** [blib/arch/auto/Bio/Ext/Align/Align.so] Error 1 
> make[1]: Leaving directory 
> `/home/thiago/temp/bioperl-ext-master/Bio/Ext/Align' 
> make: *** [subdirs] Error 2 
>
> However, the Makefile says that -fPIC is already being used, which is 
> puzzling me. 
>
> Any clues ? 
>
> Thanks. 
> Thiago 
>
>
>
> _______________________________________________ 
> Bioperl-l mailing list 
> [email protected] 
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

>
 
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