Thiago Venancio | 31 Jan 18:25 2013
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Re: bioperl-ext

Solved using the solution posted by jmf here :
https://groups.google.com/forum/?fromgroups=#!searchin/bioperl-l/bioperl-ext/bioperl-l/FgJo_g8UQE8/FB1DEjJkTooJ

Which I found after posting.

T

On Thursday, January 31, 2013 3:10:39 PM UTC-2, Thiago Venancio wrote:
>
> Hi all, 
>
> I am trying to install bioperl-ext and the compilation gives me the error: 
>
> /usr/bin/ld: libs/libsw.a(aln.o): relocation R_X86_64_32 against `.rodata' 
> can not be used when making a shared object; recompile with -fPIC 
> libs/libsw.a: could not read symbols: Bad value 
> collect2: ld returned 1 exit status 
> make[1]: *** [blib/arch/auto/Bio/Ext/Align/Align.so] Error 1 
> make[1]: Leaving directory 
> `/home/thiago/temp/bioperl-ext-master/Bio/Ext/Align' 
> make: *** [subdirs] Error 2 
>
> However, the Makefile says that -fPIC is already being used, which is 
> puzzling me. 
>
> Any clues ? 
>
> Thanks. 
> Thiago 
>
>
>
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>

Gmane