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Gmane
From: =?ISO-8859-1?Q?Carn=EB_Draug?= <carandraug+dev <at> gmail.com>
Subject: module for description of sequence variants (where to place code)
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Monday 25th February 2013 10:08:23 UTC (over 3 years ago)
Hi

I'm writing a perl module to write a description of the variance
between 2 sequences as described on
http://www.hgvs.org/mutnomen/recs-prot.html

Basically, given 2 sequences, would returns something like "p.Lys2del
p.His25_Met26insGln" if those are the differences. It also accounts
for the existence of - characters on the sequences that may come from
their alignment.

My question is, where on the project tree should I place the module?

Also, is there something already written that would convert from 1 to
3 letter code?

Carnë
 
CD: 5ms