Brian Foley | 21 Apr 00:36 2013
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Re: Annotation-assisted (and/or BLAST assisted) multiple sequence alignment tool?


>From another group, I got an answer.  The MAUVE genome alignment software 
is supposed to solve this problem.
http://gel.ahabs.wisc.edu/mauve/<https://mymail.lanl.gov/owa/redir.aspx?C=5MxmGridb0ak3GxBPlpBrluXIodTEdAI9j8xfa_Xby8mfUgaFDgvWrOafUfQzPWBp5UkseJs_kU.&URL=mailto%3aweihuamian%40gmail.com>
I have not yet downloaded it and tested it, but it does seem to be the 
right tool for the job.

Gmane