WoA | 29 Apr 23:54 2013
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Missing Method: "get_tiled_alns"


Hi All,

I'm trying to get alignment from tiled information generated out of a Blastx
report, (for two sequences made by 'blas2seq'). I'm using ActivePerl  15.6.2
and Bioperl 1.6 in Windows 7

However I'm getting the following error:

Can't locate object method "get_tiled_alns" via package
"Bio::Search::Tiling::Ma
pTiling" at tile_align_blastx.pm line 11, <GEN1> line 72.

The code is as follows:

use strict;
use warnings;
use Bio::SearchIO;
use Bio::Search::Tiling::MapTiling;

my $blio = Bio::SearchIO->new( -file => 'test.blastx2seq.out', -format
=>'blast');
my $result = $blio->next_result;
my $hit = $result->next_hit;
my $tiling = Bio::Search::Tiling::MapTiling->new($hit);
my  <at> alns = $tiling->get_tiled_alns('abc123');

my $concat_seq_obj = $alns[0]->get_seq_by_id('abc123');

--

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Gmane