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Gmane
From: Scott Cain <scott <at> scottcain.net>
Subject: Re: Q: cpan installation fails for "core.t"
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Thursday 6th June 2013 13:19:18 UTC (over 3 years ago)
Hi Celebron,

Are those the only failures and are you planning on using the assembly
modules of BioPerl?  If you aren't planning on using them, yes it's safe to
install. 

Scott


Sent from my iPhone

On Jun 5, 2013, at 5:32 AM, Cerebron Emtadrat  wrote:

> Dear mailing list,
> 
> I'm trying to install Bioperl on a Windows 7 machine running Strawberry
Perl. I've started installation using the cpan tool as described on the
bioperl.org wiki "Installing BioPerl on Unix". One of the failed tests
worries me:
> 
> t/Assembly/core.t ............................ 1/890
> --------------------- WARNING ---------------------
> MSG: Setting end to equal start[1]
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: Setting end to equal start[1]
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: Setting end to equal start[1]
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: Setting end to equal start[1]
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: Setting end to equal start[1]
> ---------------------------------------------------
> t/Assembly/core.t ............................ 246/890 Can't do inplace
edit without backup at Bio/Root/IO.pm line 513.
> # Looks like you planned 890 tests but ran 246.
> # Looks like your test exited with 25 just after 246.
> t/Assembly/core.t ............................ Dubious, test returned 25
(wstat 6400, 0x1900)
> Failed 644/890 subtests
> 
> Is it ok to install Bioperl anyway?
> 
> Thanks for your help!
> 
> Cerebron Emtadrat
> 
> _______________________________________________
> Bioperl-l mailing list
> [email protected]
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
 
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