Scott Cain | 12 Jun 16:12 2013
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Re: Error in installing bioperl on CentOS 5.6

Hi Neha,

I'm not sure Bundle::BioPerl is supported any more (which may explain why
it can't be found), but it doesn't matter since the only reason for
Bundle::BioPerl's existence was to install prereqs--it didn't install
BioPerl (which confused people).  Just install Bio::Perl via cpan instead.

Scott

On Wed, Jun 12, 2013 at 9:03 AM, neha sanghi <neha.sanghi86 <at> gmail.com>wrote:

> Dear Sir/Ma'am,
>
> I am facing problem in installing bioperl. Below is teh error message:
>
>  perl -MCPAN -e 'install Bundle::BioPerl'
> CPAN::SQLite not installed, trying to work without
> Reading '/share/apps/Metadata'
>   Database was generated on Tue, 11 Jun 2013 09:41:02 GMT
> Fetching with HTTP::Tiny:
> http://cpan.mirror.ac.za/authors/id/C/CR/CRAFFI/Bundle-BioPerl-2.1.8.tar.gz
> Fetching with HTTP::Tiny:
> http://cpan.mirror.ac.za/authors/id/C/CR/CRAFFI/CHECKSUMS
> Checksum for yes/authors/id/C/CR/CRAFFI/Bundle-BioPerl-2.1.8.tar.gz ok
> gzip: yes/authors/id/C/CR/CRAFFI/Bundle-BioPerl-2.1.8.tar.gz: No such file
> or directory
> /bin/tar: yes/authors/id/C/CR/CRAFFI/Bundle-BioPerl-2.1.8.tar.gz: Cannot
> open: No such file or directory
> /bin/tar: Error is not recoverable: exiting now
> Using Tar:/bin/tar xf
> "yes/authors/id/C/CR/CRAFFI/Bundle-BioPerl-2.1.8.tar.gz":
> /bin/tar: yes/authors/id/C/CR/CRAFFI/Bundle-BioPerl-2.1.8.tar.gz: Cannot
> open: No such file or directory
> /bin/tar: Error is not recoverable: exiting now
> Couldn't untar yes/authors/id/C/CR/CRAFFI/Bundle-BioPerl-2.1.8.tar.gz
> Directory 'yes/CRAFFI-BVVKbJ' has gone. Cannot continue.
>
>         ...propagated at /usr/lib/perl5/5.8.8/CPAN/Shell.pm line 1699.
>
> Please help me in solving this issue
>
> Thanks and Regards,
> Neha
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l <at> lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>

--

-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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