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Gmane
From: Jason Stajich <jason.stajich <at> gmail.com>
Subject: Re: FastAlign.pl, an example of bioperl script
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Wednesday 17th July 2013 20:17:15 UTC (over 3 years ago)
thanks for contributing - you can edit the wiki page to add link to your
code so no intervention by us should be necessary since it is a wiki. 

On Jun 20, 2013, at 11:06 AM, Antony Vincent 
wrote:

> Hi,
> 
> I did a bioperl script which uses the heuristic method of tfasty. The
query
> string is in amino acids and the hit string is in nucleotides. There are
> extra nucleotides at the end of the hit string (option -diff and by
default
> = 10), that allow to verify if the intron start with common rules
> (5'-GTGCGA-... for group II intron and after an exonic T for group I
> intron).
> 
> If you want add my script to this page:
> http://www.bioperl.org/wiki/Bioperl_scripts
in the examples section, i will
> be glad to help the bioperl community.
> 
> Here is my sourceforge link: http://sourceforge.net/projects/fastalignpl/
> 
> 
> Thanks,
> Antony
> _______________________________________________
> Bioperl-l mailing list
> [email protected]
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Jason Stajich
[email protected]
[email protected]
 
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