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Gmane
From: Peter Cock <p.j.a.cock <at> googlemail.com>
Subject: Re: can't get seq with bioperl
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Saturday 5th October 2013 09:50:24 UTC (over 3 years ago)
On Wed, Sep 25, 2013 at 11:07 PM, Danyu Wu  wrote:
>
> Hello,
>
> I can not get the seq from a genbank format entry using
> bioperl when both CONTIG and ORIGIN are present.  Any
> help is greatly appreciated!
>

See point [2] in this NCBI RefSeq announcement:
http://www.ncbi.nlm.nih.gov/mailman/pipermail/refseq-announce/2013q3/000110.html

Scott Markel raised this potential issue in July,

http://lists.open-bio.org/pipermail/bioperl-l/2013-July/037427.html
http://lists.open-bio.org/pipermail/bioperl-l/2013-July/037428.html

I'd fixed this in Biopython but it sounds like BioPerl may
still need updating.

Regards,

Peter
 
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