Peter Cock | 5 Oct 11:50 2013

Re: can't get seq with bioperl

On Wed, Sep 25, 2013 at 11:07 PM, Danyu Wu <danyuwu <at>> wrote:
> Hello,
> I can not get the seq from a genbank format entry using
> bioperl when both CONTIG and ORIGIN are present.  Any
> help is greatly appreciated!

See point [2] in this NCBI RefSeq announcement:

Scott Markel raised this potential issue in July,

I'd fixed this in Biopython but it sounds like BioPerl may
still need updating.