Home
Reading
Searching
Subscribe
Sponsors
Statistics
Posting
Contact
Spam
Lists
Links
About
Hosting
Filtering
Features Download
Marketing
Archives
FAQ
Blog
 
Gmane
From: Jason Stajich <jason.stajich <at> gmail.com>
Subject: Re: Error with Pal2Nal: Can't call method "run" on an undefined value
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Tuesday 5th November 2013 04:25:33 UTC (over 2 years ago)
Reading the documentation for the module can help - see the perldoc. For
example:

	use Bio::Tools::Run::Alignment::Pal2Nal;

         # Make a Pal2Nal factory
         $factory = Bio::Tools::Run::Alignment::Pal2Nal->new();

On Oct 23, 2013, at 8:38 PM, Peng Wang  wrote:

> I am trying to use Pal2Nal through the scripts:
> 
> use Bio::Tools::Run::Alignment::Pal2Nal;
> $aln = $factory->run($pep_aln, $dnafile);
> 
> The system returned the error message:
> 
> Can't call method "run" on an undefined value at ...
> 
> 
> Anybody knows what the problem is and how I should fix it?
> 
> Thanks in advance.
> _______________________________________________
> Bioperl-l mailing list
> [email protected]
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Jason Stajich
[email protected]
[email protected]
 
CD: 3ms