Francisco J. Ossandón | 28 Nov 22:48 2013

Re: First release of Bio::Community

Congratulation for your module Florent!
I have been testing the code in Windows and there are several tests failing.
Several fails are caused by same 'seek/read' problem that I found in
BioPerl, that is caused because Windows Perl hides the '\r' character when
reading files, so its absent from the variable when using m// and length()
but is present on the file. I still need to debug more.

By the way, what's the difference between 'sub', 'func' and 'method'??


Francisco J. Ossandon

-----Mensaje original-----
De: bioperl-l-bounces <at>
[mailto:bioperl-l-bounces <at>] En nombre de Fields,
Christopher J
Enviado el: jueves, 28 de noviembre de 2013 1:05
Para: Florent Angly
CC: BioPerl List
Asunto: Re: [Bioperl-l] First release of Bio::Community



On Nov 25, 2013, at 6:34 AM, Florent Angly <florent.angly <at>> wrote:

> Thank Hilmar and Chris. Yes, I don't mind the announcement being 
> poster on these websites.
> Best,
> Florent
> On Sat, Nov 23, 2013 at 5:07 AM, Fields, Christopher J 
> <cjfields <at>> wrote:
>> Very good point!  Florent, let me know if you want to add the post there,
I can probably get you set up (or post it for you directly if you want).
>> chris
>> On Nov 22, 2013, at 9:07 AM, Hilmar Lapp <hlapp <at>> wrote:
>>> Awesome! Florent, would you mind this going up as a blog post on Open
Bio? Also, have you thought about posting this to Ecolog?
>>>      -hilmar
>>> On Nov 21, 2013, at 11:07 PM, Florent Angly wrote:
>>>> Dear all,
>>>> Some time ago, I announced that I was working on a set of BioPerl 
>>>> modules collectively forming the Bio-Community distribution. These 
>>>> Moose-based modules provide objects to represent communities, 
>>>> metacommunities and their members, and they also provide many 
>>>> methods to interact with them, perform various ecological operations
>>>> rarefaction, taxonomic summary, subsampling), and to read/write 
>>>> them to file in multiple formats.
>>>> Today, I am happy to announce the release of the first version of 
>>>> these modules, which can be obtained from CPAN:
>>>> Obviously, this is just the beginning for these modules and I hope 
>>>> that interested developpers will join me to expand them.
>>>> Best,
>>>> Florent
>>>> _______________________________________________
>>>> Bioperl-l mailing list
>>>> Bioperl-l <at>
>>> --
>>> ===========================================================
>>> : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net :
>>> ===========================================================
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