Fields, Christopher J | 28 Nov 23:57 2013

Re: First release of Bio::Community

Re: method/sub/func:

   https://metacpan.org/pod/Method::Signatures

We should really move towards this (or similar) and maybe away from _rearrange(); benchmarks seems promising:

   http://perltricks.com/article/39/2013/9/8/Banish-unsightly-variable-assignments-with-Method-Signatures

chris

On Nov 28, 2013, at 3:48 PM, Francisco J. Ossandón <fossandonc <at> hotmail.com> wrote:

> Congratulation for your module Florent!
> I have been testing the code in Windows and there are several tests failing.
> Several fails are caused by same 'seek/read' problem that I found in
> BioPerl, that is caused because Windows Perl hides the '\r' character when
> reading files, so its absent from the variable when using m// and length()
> but is present on the file. I still need to debug more.
> 
> By the way, what's the difference between 'sub', 'func' and 'method'??
> 
> Cheers,
> 
> Francisco J. Ossandon
> 
> -----Mensaje original-----
> De: bioperl-l-bounces <at> lists.open-bio.org
> [mailto:bioperl-l-bounces <at> lists.open-bio.org] En nombre de Fields,
> Christopher J
> Enviado el: jueves, 28 de noviembre de 2013 1:05
> Para: Florent Angly
> CC: BioPerl List
> Asunto: Re: [Bioperl-l] First release of Bio::Community
> 
> Done!
> 
> http://news.open-bio.org/news/2013/11/initial-release-of-bioperl-biocommunit
> y-distribution/
> https://twitter.com/obf_news/status/405909716867366912
> 
> chris
> 
> On Nov 25, 2013, at 6:34 AM, Florent Angly <florent.angly <at> gmail.com> wrote:
> 
>> Thank Hilmar and Chris. Yes, I don't mind the announcement being 
>> poster on these websites.
>> Best,
>> Florent
>> 
>> On Sat, Nov 23, 2013 at 5:07 AM, Fields, Christopher J 
>> <cjfields <at> illinois.edu> wrote:
>>> Very good point!  Florent, let me know if you want to add the post there,
> I can probably get you set up (or post it for you directly if you want).
>>> 
>>> chris
>>> 
>>> On Nov 22, 2013, at 9:07 AM, Hilmar Lapp <hlapp <at> drycafe.net> wrote:
>>> 
>>>> Awesome! Florent, would you mind this going up as a blog post on Open
> Bio? Also, have you thought about posting this to Ecolog?
>>>> 
>>>>     -hilmar
>>>> 
>>>> On Nov 21, 2013, at 11:07 PM, Florent Angly wrote:
>>>> 
>>>>> Dear all,
>>>>> 
>>>>> Some time ago, I announced that I was working on a set of BioPerl 
>>>>> modules collectively forming the Bio-Community distribution. These 
>>>>> Moose-based modules provide objects to represent communities, 
>>>>> metacommunities and their members, and they also provide many 
>>>>> methods to interact with them, perform various ecological operations
> (e.g.
>>>>> rarefaction, taxonomic summary, subsampling), and to read/write 
>>>>> them to file in multiple formats.
>>>>> 
>>>>> Today, I am happy to announce the release of the first version of 
>>>>> these modules, which can be obtained from CPAN:
>>>>> http://search.cpan.org/search?query=Bio-Community&mode=dist
>>>>> 
>>>>> Obviously, this is just the beginning for these modules and I hope 
>>>>> that interested developpers will join me to expand them.
>>>>> 
>>>>> Best,
>>>>> 
>>>>> Florent
>>>>> _______________________________________________
>>>>> Bioperl-l mailing list
>>>>> Bioperl-l <at> lists.open-bio.org
>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>> 
>>>> --
>>>> ===========================================================
>>>> : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net :
>>>> ===========================================================
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> Bioperl-l mailing list
>>>> Bioperl-l <at> lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>> 
> 
> 
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Gmane