Subject: Re: Genbank files with CONTIG lines in them.
Date: Tuesday 17th December 2013 13:32:36 UTC (over 3 years ago)
On Tue, Dec 17, 2013 at 11:52 AM, Govind Chandra <[email protected]> wrote: > Hi Chris, > > As you suggested, I upgraded to Bioperl version 1.6.922 but the > problem remains. Below is the output of my test script again. > > withContigLine.gbk > > Bioperl reports length as 19314. > Length of the sequence string is . > > ========================================= > > withoutContigLine.gbk > > Bioperl reports length as 19314. > Length of the sequence string is 19314. > > ========================================= > > Perl version is: 5.018000 > Bioperl version is: 1.006922 > Bioperl version again: 220.127.116.11.18.104.22.168 > > Thanks > > Govind This sounds like the issue raised in July and again in October, where Chris thought it had been fixed: http://lists.open-bio.org/pipermail/bioperl-l/2013-October/071235.html See also point  in this NCBI RefSeq announcement: http://www.ncbi.nlm.nih.gov/mailman/pipermail/refseq-announce/2013q3/000110.html Peter