I think this has to do with the recent htslib work in samtools, post 0.1.19
I recently spent a little time trying to fix this myself but it will
require a bit more work unfortunately.
Sent from my iPad
> On Mar 27, 2014, at 9:39 AM, "Karsten" wrote:
> I am having trouble compiling Bio-Samtools-1.39
> with Samtools-0.2.0. I searched the archives and it
> seems like updates were previously needed to fix
> this issue. Any advice how to get it to compile?
> I receive the following error with compiling:
> error building c_bin/bam2bedgraph.o from 'c_bin/bam2bedgraph.c'
> I tried modifying the samtools makefile with -fPIC
> but that doesn't seem to help.
> Any suggestions?
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