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Gmane
From: Fields, Christopher J <cjfields <at> illinois.edu>
Subject: Re: DNAStatistics distance between non-overlapping sequences
Newsgroups: gmane.comp.lang.perl.bio.general
Date: Thursday 27th March 2014 22:36:29 UTC (over 2 years ago)
Interesting, since I'm the one in that email.  I'll have to investigate.

Chris

Sent from my iPad

> On Mar 27, 2014, at 9:36 AM, "Hannes Hettling"
 wrote:
> 
> A few years ago, a bug was reported (bug 2901) and apparently fixed
> (http://bioperl.org/pipermail/bioperl-l/2010-January/032026.html)
in
> DNAStatistics when calculating distances of non overlapping sequences. 
> 
> However, I am still getting the error
> 
> 'Illegal division by zero
> at /usr/local/src/bioperl-live/Bio/Align/DNAStatistics.pm line 527'
> 
> when calculating distances for the following sequences:
> 
> 
>> seq1
> GGTACCAGCAGGTGGGCCGCCTACTGCGCACGCGCGGGTTTGCGGGCAGCCGC
>> seq2
> GGTACCAGCTGGTGGGCCGCCTACTGCGCACGCGCGGGTTTGCGGGCAGCCGC
>> seq3
> GGTACCAGCAGGTGGTCCGCCTA------------------------------
>> seq4
> --------------------------CGCACGCGCGTGTTTGCGGGCAGCCGC
> 
> I am using the latest bioperl-live from github.
> Could anyone suggest a way around this?
> 
> Many thanks in advance,
> 
> Hannes
> 
> 
> _______________________________________________
> Bioperl-l mailing list
> [email protected]
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
 
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