Fields, Christopher J | 14 May 18:29 2014

Re: [Attachment Removed] Bio::Tools::Analysis::Protein::GOR4;

The raw result is attainable using the result method according to the module documentation (see below).
The rest of the documentation goes into more detail on how to retrieve the data in a more OO manner.

chris

[cjfields <at> cjfields ~]$ perldoc Bio::Tools::Analysis::Protein::GOR4

NAME
       Bio::Tools::Analysis::Protein::GOR4 - a wrapper around GOR4 protein
       secondary structure prediction server

SYNOPSIS
         use Bio::Tools::Analysis::Protein::GOR4;
         #get a Bio::Seq or Bio::PrimarySeq
         use Bio::PrimarySeq;
         $seq = Bio::PrimarySeq->new
           (-seq=>'IKLCVHHJHJHJHJHJHJHNLAILAKAHLIELALAL',
            -primary_id=>'test'); # a Bio::PrimarySeqI object

         my $gor4 = Bio::Tools::Analysis::Protein::GOR4->new (-seq=>$seq);
         $gor4->run;
         print $gor4->result;# #raw text to standard error

On May 2, 2014, at 1:58 PM, Marziyeh Movahedi <movahedi.marziyeh <at> gmail.com> wrote:

> Hello bioperl support manager
> i have difficulty using this module actually i don't know which argument
> use for result method to see the result of prediction
> thank you
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> Bioperl-l <at> lists.open-bio.org
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Gmane