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Gmane
From: michael bane <michael.bane-m7QheJJv02N4oUbgFh0ZNQ <at> public.gmane.org>
Subject: hdf5 1.8.7 problems
Newsgroups: gmane.comp.programming.hdf
Date: Friday 24th June 2011 12:01:04 UTC (over 5 years ago)
My hdf5 1.8.7 appears to build okay but my make check fails. This is on a
Sci Linux box:
uname -a
Linux redqueen.rcs.manchester.ac.uk 2.6.18-238.1.1.el5 #1 SMP Tue Jan 18
18:49:37 EST 2011 x86_64 x86_64 x86_64 GNU/Linux

I attach the std out+err from my configure and make steps. And here is the
detailed error

[[email protected] hdf5-1.8.7]$
/software/hdf/5/1.8.7/hdf5-1.8.7/test/.libs/lt-testhdf5 -vv -o select 2>&1
| less

For help use: /software/hdf/5/1.8.7/hdf5-1.8.7/test/.libs/lt-testhdf5 -help
Linked with hdf5 version 1.8 release 7
Testing  -- Configure definitions (config) 
Testing  -- Encoding/decoding metadata (metadata) 
Testing  -- Checksum algorithm (checksum) 
Testing  -- Ternary Search Trees (tst) 
Testing  -- Memory Heaps (heap) 
Testing  -- Skip Lists (skiplist) 
Testing  -- Reference Counted Strings (refstr) 
Testing  -- Low-Level File I/O (file) 
Testing  -- Generic Object Functions (objects) 
Testing  -- Dataspaces (h5s) 
*** UNEXPECTED RETURN from H5Fopen is -1 line  188 in th5s.c
HDF5-DIAG: Error detected in HDF5 (1.8.7) thread 0:
 #000: H5F.c line 1522 in H5Fopen(): unable to open file
   major: File accessability
   minor: Unable to open file
 #001: H5F.c line 1211 in H5F_open(): unable to open file: time = Fri Jun
24 12:41:23 2011
, name = 'th5s.h5', tent_flags = 0
   major: File accessability
   minor: Unable to open file
 #002: H5FD.c line 1086 in H5FD_open(): open failed
   major: Virtual File Layer
   minor: Unable to initialize object
 #003: H5FDsec2.c line 348 in H5FD_sec2_open(): unable to open file: name =
'th5s.h5', errno = 2, error mess
age = 'No such file or directory', flags = 0, o_flags = 0
   major: File accessability
   minor: Unable to open file
***cannot open the pre-created H5S_MAX_RANK test file (th5s.h5)
Testing  -- Dataspace coordinates (coords) 
Testing  -- Shared Object Header Messages (sohm) 
Testing  -- Attributes (attr) 
Testing  -- Selections (select) 
large cube read from small cube has bad data! Line=2015
large cube read from small cube has bad data! Line=2015
large cube read from small cube has bad data! Line=2015
large cube read from small cube has bad data! Line=2015
large cube read from small cube has bad data! Line=2015
large cube written from small cube has bad data! Line=2256
large cube written from small cube has bad data! Line=2256
large cube written from small cube has bad data! Line=2256
large cube written from small cube has bad data! Line=2256
large cube written from small cube has bad data! Line=2256
large cube read from small cube has bad data! Line=2015
large cube read from small cube has bad data! Line=2015
{& much more of same}


Many thanks, Michael
 
CD: 5ms