michael bane | 24 Jun 14:01 2011
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hdf5 1.8.7 problems

My hdf5 1.8.7 appears to build okay but my make check fails. This is on a Sci Linux box:
uname -a
Linux redqueen.rcs.manchester.ac.uk 2.6.18-238.1.1.el5 #1 SMP Tue Jan 18 18:49:37 EST 2011 x86_64
x86_64 x86_64 GNU/Linux

I attach the std out+err from my configure and make steps. And here is the detailed error

[mccssmb2 <at> redqueen hdf5-1.8.7]$ /software/hdf/5/1.8.7/hdf5-1.8.7/test/.libs/lt-testhdf5 -vv -o
select 2>&1 | less

For help use: /software/hdf/5/1.8.7/hdf5-1.8.7/test/.libs/lt-testhdf5 -help
Linked with hdf5 version 1.8 release 7
Testing  -- Configure definitions (config) 
Testing  -- Encoding/decoding metadata (metadata) 
Testing  -- Checksum algorithm (checksum) 
Testing  -- Ternary Search Trees (tst) 
Testing  -- Memory Heaps (heap) 
Testing  -- Skip Lists (skiplist) 
Testing  -- Reference Counted Strings (refstr) 
Testing  -- Low-Level File I/O (file) 
Testing  -- Generic Object Functions (objects) 
Testing  -- Dataspaces (h5s) 
*** UNEXPECTED RETURN from H5Fopen is -1 line  188 in th5s.c
HDF5-DIAG: Error detected in HDF5 (1.8.7) thread 0:
 #000: H5F.c line 1522 in H5Fopen(): unable to open file
   major: File accessability
   minor: Unable to open file
 #001: H5F.c line 1211 in H5F_open(): unable to open file: time = Fri Jun 24 12:41:23 2011
, name = 'th5s.h5', tent_flags = 0
   major: File accessability
   minor: Unable to open file
 #002: H5FD.c line 1086 in H5FD_open(): open failed
   major: Virtual File Layer
   minor: Unable to initialize object
 #003: H5FDsec2.c line 348 in H5FD_sec2_open(): unable to open file: name = 'th5s.h5', errno = 2, error mess
age = 'No such file or directory', flags = 0, o_flags = 0
   major: File accessability
   minor: Unable to open file
***cannot open the pre-created H5S_MAX_RANK test file (th5s.h5)
Testing  -- Dataspace coordinates (coords) 
Testing  -- Shared Object Header Messages (sohm) 
Testing  -- Attributes (attr) 
Testing  -- Selections (select) 
large cube read from small cube has bad data! Line=2015
large cube read from small cube has bad data! Line=2015
large cube read from small cube has bad data! Line=2015
large cube read from small cube has bad data! Line=2015
large cube read from small cube has bad data! Line=2015
large cube written from small cube has bad data! Line=2256
large cube written from small cube has bad data! Line=2256
large cube written from small cube has bad data! Line=2256
large cube written from small cube has bad data! Line=2256
large cube written from small cube has bad data! Line=2256
large cube read from small cube has bad data! Line=2015
large cube read from small cube has bad data! Line=2015
{& much more of same}

Many thanks, Michael
Making all in src
make[1]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/src'
make  all-am
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/src'
  CC     H5.lo
H5.c(532): (col. 3) remark: LOOP WAS VECTORIZED.
H5.c(532): (col. 3) remark: LOOP WAS VECTORIZED.
  CC     H5checksum.lo
  CC     H5dbg.lo
  CC     H5system.lo
  CC     H5timer.lo
  CC     H5trace.lo
H5trace.c(204): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     H5A.lo
  CC     H5Abtree2.lo
  CC     H5Adense.lo
  CC     H5Adeprec.lo
  CC     H5Aint.lo
  CC     H5Atest.lo
  CC     H5AC.lo
  CC     H5B.lo
  CC     H5Bcache.lo
  CC     H5Bdbg.lo
  CC     H5B2.lo
  CC     H5B2cache.lo
  CC     H5B2dbg.lo
  CC     H5B2hdr.lo
  CC     H5B2int.lo
H5B2int.c(1329): (col. 13) remark: LOOP WAS VECTORIZED.
H5B2int.c(547): (col. 13) remark: LOOP WAS VECTORIZED.
H5B2int.c(600): (col. 13) remark: LOOP WAS VECTORIZED.
H5B2int.c(803): (col. 17) remark: LOOP WAS VECTORIZED.
H5B2int.c(849): (col. 17) remark: LOOP WAS VECTORIZED.
H5B2int.c(892): (col. 17) remark: LOOP WAS VECTORIZED.
H5B2int.c(931): (col. 17) remark: LOOP WAS VECTORIZED.
H5B2int.c(296): (col. 9) remark: LOOP WAS VECTORIZED.
H5B2int.c(300): (col. 9) remark: LOOP WAS VECTORIZED.
  CC     H5B2stat.lo
  CC     H5B2test.lo
  CC     H5C.lo
  CC     H5CS.lo
  CC     H5D.lo
  CC     H5Dbtree.lo
  CC     H5Dchunk.lo
H5Dchunk.c(2845): (col. 16) remark: LOOP WAS VECTORIZED.
H5Dchunk.c(624): (col. 5) remark: LOOP WAS VECTORIZED.
H5Dchunk.c(760): (col. 16) remark: LOOP WAS VECTORIZED.
  CC     H5Dcompact.lo
  CC     H5Dcontig.lo
  CC     H5Ddbg.lo
  CC     H5Ddeprec.lo
  CC     H5Defl.lo
  CC     H5Dfill.lo
  CC     H5Dint.lo
H5Dint.c(2365): warning #177: label "done" was declared but never referenced
  done:
  ^

  CC     H5Dio.lo
H5Dio.c(376): warning #167: argument of type "void **" is incompatible with parameter of type "const void **"
                  (unsigned)H5S_GET_EXTENT_NDIMS(file_space), buf, &adj_buf, type_info.dst_type_size) < 0)
                                                                   ^

H5Dio.c(601): warning #167: argument of type "void **" is incompatible with parameter of type "const void **"
                  (unsigned)H5S_GET_EXTENT_NDIMS(file_space), buf, &adj_buf, type_info.src_type_size) < 0)
                                                                   ^

  CC     H5Dlayout.lo
  CC     H5Dmpio.lo
  CC     H5Doh.lo
  CC     H5Dscatgath.lo
  CC     H5Dselect.lo
  CC     H5Dtest.lo
  CC     H5E.lo
H5E.c(1358): warning #266: function "vasprintf" declared implicitly
      if(HDvasprintf(&tmp, fmt, ap) < 0)
         ^

  CC     H5Edeprec.lo
  CC     H5Eint.lo
H5Eint.c(724): warning #266: function "vasprintf" declared implicitly
      if(HDvasprintf(&tmp, fmt, ap) < 0)
         ^

  CC     H5F.lo
  CC     H5Faccum.lo
  CC     H5Fdbg.lo
  CC     H5Fefc.lo
  CC     H5Ffake.lo
  CC     H5Fio.lo
  CC     H5Fmount.lo
  CC     H5Fmpi.lo
  CC     H5Fquery.lo
  CC     H5Fsfile.lo
  CC     H5Fsuper.lo
  CC     H5Fsuper_cache.lo
  CC     H5Ftest.lo
  CC     H5FD.lo
  CC     H5FDcore.lo
  CC     H5FDdirect.lo
  CC     H5FDfamily.lo
  CC     H5FDint.lo
  CC     H5FDlog.lo
  CC     H5FDmpi.lo
  CC     H5FDmpio.lo
  CC     H5FDmpiposix.lo
  CC     H5FDmulti.lo
H5FDmulti.c(866): (col. 5) remark: LOOP WAS VECTORIZED.
H5FDmulti.c(456): (col. 2) remark: LOOP WAS VECTORIZED.
H5FDmulti.c(308): (col. 5) remark: PARTIAL LOOP WAS VECTORIZED.
H5FDmulti.c(308): (col. 5) remark: PARTIAL LOOP WAS VECTORIZED.
  CC     H5FDsec2.lo
  CC     H5FDspace.lo
  CC     H5FDstdio.lo
  CC     H5FL.lo
  CC     H5FO.lo
  CC     H5FS.lo
  CC     H5FScache.lo
  CC     H5FSdbg.lo
  CC     H5FSsection.lo
  CC     H5FSstat.lo
  CC     H5FStest.lo
  CC     H5G.lo
  CC     H5Gbtree2.lo
  CC     H5Gcache.lo
  CC     H5Gcompact.lo
  CC     H5Gdense.lo
  CC     H5Gdeprec.lo
  CC     H5Gent.lo
  CC     H5Gint.lo
  CC     H5Glink.lo
  CC     H5Gloc.lo
  CC     H5Gname.lo
  CC     H5Gnode.lo
  CC     H5Gobj.lo
H5Gobj.c(271): warning #167: argument of type "const H5O_linfo_t *" is incompatible with parameter of type "void *"
          if(H5O_msg_create(oloc, H5O_LINFO_ID, 0, H5O_UPDATE_TIME, linfo, dxpl_id) < 0)
                                                                    ^

H5Gobj.c(275): warning #167: argument of type "const H5O_ginfo_t *" is incompatible with parameter of type "void *"
          if(H5O_msg_create(oloc, H5O_GINFO_ID, H5O_MSG_FLAG_CONSTANT, 0, ginfo, dxpl_id) < 0)
                                                                          ^

H5Gobj.c(280): warning #167: argument of type "const H5O_pline_t *" is incompatible with parameter of type "void *"
              if(H5O_msg_create(oloc, H5O_PLINE_ID, H5O_MSG_FLAG_CONSTANT, 0, pline, dxpl_id) < 0)
                                                                              ^

  CC     H5Goh.lo
  CC     H5Groot.lo
  CC     H5Gstab.lo
  CC     H5Gtest.lo
  CC     H5Gtraverse.lo
H5Gtraverse.c(789): warning #167: argument of type "const H5O_ginfo_t *" is incompatible with parameter of type "void *"
                      if(H5O_msg_reset(H5O_GINFO_ID, ginfo) < 0)
                                                     ^

H5Gtraverse.c(792): warning #167: argument of type "const H5O_linfo_t *" is incompatible with parameter of type "void *"
                      if(H5O_msg_reset(H5O_LINFO_ID, linfo) < 0)
                                                     ^

H5Gtraverse.c(795): warning #167: argument of type "const H5O_pline_t *" is incompatible with parameter of type "void *"
                      if(H5O_msg_reset(H5O_PLINE_ID, pline) < 0)
                                                     ^

  CC     H5HF.lo
  CC     H5HFbtree2.lo
  CC     H5HFcache.lo
  CC     H5HFdbg.lo
  CC     H5HFdblock.lo
  CC     H5HFdtable.lo
  CC     H5HFhdr.lo
  CC     H5HFhuge.lo
  CC     H5HFiblock.lo
  CC     H5HFiter.lo
  CC     H5HFman.lo
  CC     H5HFsection.lo
  CC     H5HFspace.lo
  CC     H5HFstat.lo
  CC     H5HFtest.lo
  CC     H5HFtiny.lo
  CC     H5HG.lo
H5HG.c(640): (col. 20) remark: LOOP WAS VECTORIZED.
  CC     H5HGcache.lo
  CC     H5HGdbg.lo
  CC     H5HL.lo
  CC     H5HLcache.lo
  CC     H5HLdbg.lo
  CC     H5HLint.lo
  CC     H5HP.lo
  CC     H5I.lo
  CC     H5Itest.lo
  CC     H5L.lo
  CC     H5Lexternal.lo
  CC     H5make_libsettings.o
  CCLD   H5make_libsettings
LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo  |                  \
		sed -e 's/-L/:/g' -e 's/ //g'`"                               \
	 ./H5make_libsettings > H5lib_settings.c  ||                               \
	    (test $HDF5_Make_Ignore && echo "*** Error ignored") ||          \
	    (rm -f H5lib_settings.c ; exit 1)
  CC     H5lib_settings.lo
  CC     H5MF.lo
  CC     H5MFaggr.lo
  CC     H5MFdbg.lo
  CC     H5MFsection.lo
  CC     H5MM.lo
  CC     H5MP.lo
  CC     H5MPtest.lo
  CC     H5O.lo
  CC     H5Oainfo.lo
  CC     H5Oalloc.lo
  CC     H5Oattr.lo
  CC     H5Oattribute.lo
H5Oattribute.c(1766): (col. 9) remark: LOOP WAS VECTORIZED.
  CC     H5Obogus.lo
  CC     H5Obtreek.lo
  CC     H5Ocache.lo
  CC     H5Ochunk.lo
  CC     H5Ocont.lo
  CC     H5Ocopy.lo
H5Ocopy.c(684): warning #556: a value of type "const H5O_obj_class_t *" cannot be assigned to an entity of type "H5O_obj_class_t *"
      addr_map->obj_class = obj_class;
                          ^

  CC     H5Odbg.lo
  CC     H5Odrvinfo.lo
  CC     H5Odtype.lo
  CC     H5Oefl.lo
  CC     H5Ofill.lo
  CC     H5Oginfo.lo
  CC     H5Olayout.lo
  CC     H5Olinfo.lo
  CC     H5Olink.lo
  CC     H5Omessage.lo
H5Omessage.c(535): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     H5Omtime.lo
  CC     H5Oname.lo
  CC     H5Onull.lo
  CC     H5Opline.lo
  CC     H5Orefcount.lo
  CC     H5Osdspace.lo
  CC     H5Oshared.lo
  CC     H5Ostab.lo
  CC     H5Oshmesg.lo
  CC     H5Otest.lo
H5Otest.c(504): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     H5Ounknown.lo
  CC     H5P.lo
  CC     H5Pacpl.lo
  CC     H5Pdapl.lo
  CC     H5Pdcpl.lo
  CC     H5Pdeprec.lo
  CC     H5Pdxpl.lo
  CC     H5Pfapl.lo
  CC     H5Pfcpl.lo
  CC     H5Pfmpl.lo
  CC     H5Pgcpl.lo
  CC     H5Pint.lo
  CC     H5Plapl.lo
  CC     H5Plcpl.lo
  CC     H5Pocpl.lo
  CC     H5Pocpypl.lo
  CC     H5Pstrcpl.lo
  CC     H5Ptest.lo
  CC     H5R.lo
  CC     H5Rdeprec.lo
  CC     H5RC.lo
  CC     H5RS.lo
  CC     H5S.lo
  CC     H5Sall.lo
H5Sall.c(607): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     H5Sdbg.lo
  CC     H5Shyper.lo
H5Shyper.c(8844): (col. 25) remark: LOOP WAS VECTORIZED.
H5Shyper.c(8844): (col. 25) remark: LOOP WAS VECTORIZED.
H5Shyper.c(8847): (col. 25) remark: LOOP WAS VECTORIZED.
H5Shyper.c(8847): (col. 25) remark: LOOP WAS VECTORIZED.
H5Shyper.c(8847): (col. 25) remark: LOOP WAS VECTORIZED.
H5Shyper.c(2123): (col. 9) remark: LOOP WAS VECTORIZED.
H5Shyper.c(6453): (col. 25) remark: LOOP WAS VECTORIZED.
H5Shyper.c(6533): (col. 16) remark: LOOP WAS VECTORIZED.
H5Shyper.c(2723): (col. 5) remark: LOOP WAS VECTORIZED.
H5Shyper.c(3924): (col. 12) remark: LOOP WAS VECTORIZED.
H5Shyper.c(3668): (col. 17) remark: LOOP WAS VECTORIZED.
H5Shyper.c(2603): (col. 21) remark: LOOP WAS VECTORIZED.
H5Shyper.c(2603): (col. 21) remark: LOOP WAS VECTORIZED.
H5Shyper.c(352): (col. 13) remark: LOOP WAS VECTORIZED.
  CC     H5Smpio.lo
  CC     H5Snone.lo
  CC     H5Spoint.lo
H5Spoint.c(1093): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     H5Sselect.lo
  CC     H5Stest.lo
  CC     H5SL.lo
H5SL.c(872): warning #69: integer conversion resulted in truncation
      if(NULL == (header = H5SL_new_node(NULL, NULL, ULONG_MAX)))
                                                     ^

  CC     H5SM.lo
  CC     H5SMbtree2.lo
  CC     H5SMcache.lo
  CC     H5SMmessage.lo
  CC     H5SMtest.lo
  CC     H5ST.lo
  CC     H5T.lo
H5T.c(3156): warning #167: argument of type "const H5O_loc_t *" is incompatible with parameter of type "H5O_loc_t *"
                      if(H5O_open(&old_dt->oloc) < 0)
                                  ^

H5T.c(3181): warning #167: argument of type "const H5O_loc_t *" is incompatible with parameter of type "H5O_loc_t *"
                          if(H5O_open(&old_dt->oloc) < 0)
                                      ^

H5T.c(3322): warning #167: argument of type "const H5O_loc_t *" is incompatible with parameter of type "H5O_loc_t *"
          if(H5O_loc_copy(&(new_dt->oloc), &(old_dt->oloc), H5_COPY_DEEP) < 0)
                                           ^

  CC     H5Tarray.lo
  CC     H5Tbit.lo
H5Tbit.c(687): (col. 9) remark: LOOP WAS VECTORIZED.
  CC     H5Tcommit.lo
  CC     H5Tcompound.lo
  CC     H5Tconv.lo
H5Tconv.c(2736): (col. 16) remark: LOOP WAS VECTORIZED.
H5Tconv.c(1663): (col. 25) remark: LOOP WAS VECTORIZED.
  CC     H5Tcset.lo
  CC     H5Tdbg.lo
  CC     H5Tdeprec.lo
  CC     H5Tenum.lo
  CC     H5Tfields.lo
  CC     H5Tfixed.lo
  CC     H5Tfloat.lo
  CC     H5detect-H5detect.o
H5detect.c(946): warning #279: controlling expression is constant
  	    assert("INTERNAL ERROR" && 0);
  	    ^

H5detect.c(1311): warning #167: argument of type "volatile float *" is incompatible with parameter of type "void *"
      DETECT_F(float,		  FLOAT,        d_g[nd_g]); nd_g++;
      ^

H5detect.c(1311): warning #167: argument of type "volatile float *" is incompatible with parameter of type "void *"
      DETECT_F(float,		  FLOAT,        d_g[nd_g]); nd_g++;
      ^

H5detect.c(1311): warning #167: argument of type "volatile float *" is incompatible with parameter of type "void *"
      DETECT_F(float,		  FLOAT,        d_g[nd_g]); nd_g++;
      ^

H5detect.c(1311): warning #167: argument of type "volatile float *" is incompatible with parameter of type "void *"
      DETECT_F(float,		  FLOAT,        d_g[nd_g]); nd_g++;
      ^

H5detect.c(1312): warning #167: argument of type "volatile double *" is incompatible with parameter of type "void *"
      DETECT_F(double,		  DOUBLE,       d_g[nd_g]); nd_g++;
      ^

H5detect.c(1312): warning #167: argument of type "volatile double *" is incompatible with parameter of type "void *"
      DETECT_F(double,		  DOUBLE,       d_g[nd_g]); nd_g++;
      ^

H5detect.c(1312): warning #167: argument of type "volatile double *" is incompatible with parameter of type "void *"
      DETECT_F(double,		  DOUBLE,       d_g[nd_g]); nd_g++;
      ^

H5detect.c(1312): warning #167: argument of type "volatile double *" is incompatible with parameter of type "void *"
      DETECT_F(double,		  DOUBLE,       d_g[nd_g]); nd_g++;
      ^

H5detect.c(1533): warning #167: argument of type "volatile long double *" is incompatible with parameter of type "void *"
      DETECT_F(long double,	  LDOUBLE,      d_g[nd_g]); nd_g++;
      ^

H5detect.c(1533): warning #167: argument of type "volatile long double *" is incompatible with parameter of type "void *"
      DETECT_F(long double,	  LDOUBLE,      d_g[nd_g]); nd_g++;
      ^

H5detect.c(1533): warning #167: argument of type "volatile long double *" is incompatible with parameter of type "void *"
      DETECT_F(long double,	  LDOUBLE,      d_g[nd_g]); nd_g++;
      ^

H5detect.c(1533): warning #167: argument of type "volatile long double *" is incompatible with parameter of type "void *"
      DETECT_F(long double,	  LDOUBLE,      d_g[nd_g]); nd_g++;
      ^

H5detect.c(989): (col. 6) remark: LOOP WAS VECTORIZED.
H5detect.c(996): (col. 6) remark: LOOP WAS VECTORIZED.
  CCLD   H5detect
LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo  |                  \
		sed -e 's/-L/:/g' -e 's/ //g'`"                               \
	 ./H5detect > H5Tinit.c  ||                               \
	    (test $HDF5_Make_Ignore && echo "*** Error ignored") ||          \
	    (rm -f H5Tinit.c ; exit 1)
  CC     H5Tinit.lo
  CC     H5Tnative.lo
  CC     H5Toffset.lo
  CC     H5Toh.lo
  CC     H5Topaque.lo
  CC     H5Torder.lo
  CC     H5Tpad.lo
  CC     H5Tprecis.lo
  CC     H5Tstrpad.lo
  CC     H5Tvisit.lo
  CC     H5Tvlen.lo
  CC     H5TS.lo
  CC     H5V.lo
  CC     H5WB.lo
  CC     H5Z.lo
H5Z.c(621): (col. 17) remark: LOOP WAS VECTORIZED.
  CC     H5Zdeflate.lo
  CC     H5Zfletcher32.lo
  CC     H5Znbit.lo
  CC     H5Zshuffle.lo
  CC     H5Zszip.lo
  CC     H5Zscaleoffset.lo
H5Zscaleoffset.c(1455): (col. 9) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1452): (col. 9) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1449): (col. 9) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1405): (col. 9) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1402): (col. 9) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1399): (col. 9) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1519): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1522): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1503): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1503): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1500): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1500): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1497): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1494): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1479): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1479): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1476): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1476): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1473): (col. 7) remark: LOOP WAS VECTORIZED.
H5Zscaleoffset.c(1470): (col. 7) remark: LOOP WAS VECTORIZED.
  CC     H5Ztrans.lo
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1064): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1068): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1072): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1072): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1072): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1072): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1072): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1072): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1072): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1076): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1076): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1076): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1076): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1076): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1076): (col. 3) remark: LOOP WAS VECTORIZED.
H5Ztrans.c(1076): (col. 3) remark: LOOP WAS VECTORIZED.
  CCLD   libhdf5.la
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/src'
make[1]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/src'
Making all in test
make[1]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/test'
  CC     h5test.lo
h5test.c(938): warning #279: controlling expression is constant
              HDassert(0 && "Unknown VFD!");
              ^

  CC     testframe.lo
testframe.c(619): warning #167: argument of type "H5E_auto2_t *" is incompatible with parameter of type "H5E_auto2_t"
      H5Eset_auto2(H5E_DEFAULT, PrintErrorStackFunc, PrintErrorStackData);
                                ^

  CC     cache_common.lo
  CCLD   libh5test.la
  CC     testhdf5.o
  CC     tarray.o
tarray.c(1534): (col. 3) remark: PARTIAL LOOP WAS VECTORIZED.
tarray.c(1534): (col. 3) remark: PARTIAL LOOP WAS VECTORIZED.
  CC     tattr.o
tattr.c(9855): (col. 9) remark: LOOP WAS VECTORIZED.
tattr.c(9858): (col. 9) remark: LOOP WAS VECTORIZED.
  CC     tchecksum.o
tchecksum.c(233): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     tconfig.o
  CC     tfile.o
tfile.c(1401): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     tgenprop.o
  CC     th5o.o
th5o.c(783): (col. 9) remark: LOOP WAS VECTORIZED.
  CC     th5s.o
  CC     tcoords.o
  CC     theap.o
  CC     tid.o
  CC     titerate.o
  CC     tmeta.o
  CC     tmisc.o
tmisc.c(2701): warning #810: conversion from "void *" to "const char" may lose significant bits
                          {"1234567", "1234567\0", "12345678", {NULL}};
                                                                ^

tmisc.c(2780): warning #810: conversion from "void *" to "const char" may lose significant bits
                          {"1234567", "1234567\0", "12345678", {NULL}};
                                                                ^

tmisc.c(5183): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     trefer.o
trefer.c(496): warning #69: integer conversion resulted in truncation
      hdset_reg_ref_t  nvrbuf[3]={0,101,1000000000}; /* buffer with non-valid refs */
                                        ^

  CC     trefstr.o
  CC     tselect.o
tselect.c(13121): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(13122): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(13123): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(13124): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(13187): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(10536): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(10549): (col. 5) remark: PARTIAL LOOP WAS VECTORIZED.
tselect.c(10549): (col. 5) remark: PARTIAL LOOP WAS VECTORIZED.
tselect.c(1852): (col. 5) remark: PARTIAL LOOP WAS VECTORIZED.
tselect.c(3574): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(2944): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(3057): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(3202): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(3335): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(2433): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(2443): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(2452): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(2565): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(1506): (col. 5) remark: FUSED LOOP WAS VECTORIZED.
tselect.c(1512): (col. 5) remark: FUSED LOOP WAS VECTORIZED.
tselect.c(1534): (col. 5) remark: FUSED LOOP WAS VECTORIZED.
tselect.c(1540): (col. 5) remark: FUSED LOOP WAS VECTORIZED.
tselect.c(1379): (col. 5) remark: FUSED LOOP WAS VECTORIZED.
tselect.c(1385): (col. 5) remark: FUSED LOOP WAS VECTORIZED.
tselect.c(1407): (col. 5) remark: FUSED LOOP WAS VECTORIZED.
tselect.c(1413): (col. 5) remark: FUSED LOOP WAS VECTORIZED.
tselect.c(10337): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(10345): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(10353): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(10361): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(10369): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(10377): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(10385): (col. 5) remark: BLOCK WAS VECTORIZED.
tselect.c(10814): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(10841): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(10930): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(10950): (col. 9) remark: LOOP WAS VECTORIZED.
tselect.c(10969): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(10992): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(11042): (col. 9) remark: LOOP WAS VECTORIZED.
tselect.c(11070): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(11467): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(11494): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(12582): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(12678): (col. 5) remark: LOOP WAS VECTORIZED.
tselect.c(12789): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     tskiplist.o
  CC     tsohm.o
  CC     ttime.o
  CC     ttst.o
  CC     tunicode.o
  CC     tvlstr.o
  CC     tvltypes.o
  CCLD   testhdf5
  CC     lheap.o
  CCLD   lheap
  CC     ohdr.o
  CCLD   ohdr
  CC     stab.o
  CCLD   stab
  CC     gheap.o
  CCLD   gheap
  CC     cache.o
cache.c(25750): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(25822): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(25897): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(25973): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26046): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26121): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26193): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26269): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26341): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26413): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26488): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26560): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26636): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26709): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26784): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26856): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(26928): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27004): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27079): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27154): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27227): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27302): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27375): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27451): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27524): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27599): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27671): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27745): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27817): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27891): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

cache.c(27963): warning #266: function "resize_configs_are_equal" declared implicitly
          } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
                        ^

  CCLD   cache
  CC     cache_api.o
cache_api.c(265): warning #266: function "resize_configs_are_equal" declared implicitly
  	if ( ! resize_configs_are_equal(&default_auto_size_ctl, \
  	       ^

cache_api.c(414): warning #266: function "resize_configs_are_equal" declared implicitly
  	if ( ! resize_configs_are_equal(&mod_auto_size_ctl, \
  	       ^

  CCLD   cache_api
  CC     pool.o
  CCLD   pool
  CC     accum.o
accum.c(105): (col. 16) remark: LOOP WAS VECTORIZED.
accum.c(106): (col. 16) remark: LOOP WAS VECTORIZED.
accum.c(107): (col. 16) remark: LOOP WAS VECTORIZED.
accum.c(110): (col. 16) remark: LOOP WAS VECTORIZED.
accum.c(111): (col. 16) remark: LOOP WAS VECTORIZED.
accum.c(113): (col. 16) remark: LOOP WAS VECTORIZED.
accum.c(113): (col. 16) remark: LOOP WAS VECTORIZED.
accum.c(113): (col. 16) remark: LOOP WAS VECTORIZED.
accum.c(1018): (col. 5) remark: LOOP WAS VECTORIZED.
accum.c(344): (col. 5) remark: LOOP WAS VECTORIZED.
accum.c(1274): (col. 5) remark: LOOP WAS VECTORIZED.
accum.c(1285): (col. 5) remark: LOOP WAS VECTORIZED.
accum.c(1296): (col. 5) remark: LOOP WAS VECTORIZED.
accum.c(951): (col. 5) remark: LOOP WAS VECTORIZED.
accum.c(884): (col. 5) remark: LOOP WAS VECTORIZED.
accum.c(281): (col. 5) remark: LOOP WAS VECTORIZED.
accum.c(222): (col. 5) remark: LOOP WAS VECTORIZED.
accum.c(166): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   accum
  CC     hyperslab.o
hyperslab.c(1141): (col. 13) remark: LOOP WAS VECTORIZED.
hyperslab.c(814): (col. 9) remark: LOOP WAS VECTORIZED.
hyperslab.c(971): (col. 5) remark: BLOCK WAS VECTORIZED.
hyperslab.c(453): (col. 37) remark: LOOP WAS VECTORIZED.
hyperslab.c(478): (col. 37) remark: LOOP WAS VECTORIZED.
hyperslab.c(512): (col. 37) remark: LOOP WAS VECTORIZED.
  CCLD   hyperslab
  CC     istore.o
istore.c(617): (col. 5) remark: LOOP WAS VECTORIZED.
istore.c(470): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   istore
  CC     bittests.o
  CCLD   bittests
  CC     dt_arith.o
dt_arith.c(1776): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned char, UCHAR_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1776): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned char, UCHAR_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1776): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned char, UCHAR_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1780): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned short, USHRT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1780): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned short, USHRT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1780): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned short, USHRT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1784): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned int, UINT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1784): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned int, UINT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1784): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned int, UINT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1788): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long, ULONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1788): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long, ULONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1788): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long, ULONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1792): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long long, ULLONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1792): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long long, ULLONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(1792): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long long, ULLONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3467): warning #1011: missing return statement at end of non-void function "test_conv_flt_1"
  }
  ^

dt_arith.c(3748): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned char, UCHAR_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3748): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned char, UCHAR_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3748): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned char, UCHAR_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3752): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned short, USHRT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3752): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned short, USHRT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3752): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned short, USHRT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3756): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned int, UINT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3756): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned int, UINT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3756): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned int, UINT_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3760): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long, ULONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3760): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long, ULONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3760): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long, ULONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3764): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long long, ULLONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3764): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long long, ULLONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

dt_arith.c(3764): warning #186: pointless comparison of unsigned integer with zero
          INIT_INTEGER(unsigned long long, ULLONG_MAX, 0, src_size, dst_size, src_nbits, buf, saved, nelmts);
          ^

  CCLD   dt_arith
  CC     dtypes.o
dtypes.c(1538): warning #181: argument is incompatible with corresponding format string conversion
          printf("The size of the packed compound datatype is incorrect: tsize=%d\n", tsize);
                                                                                      ^

dtypes.c(3714): (col. 9) remark: LOOP WAS VECTORIZED.
dtypes.c(2328): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   dtypes
  CC     dsets.o
dsets.c(7656): (col. 5) remark: LOOP WAS VECTORIZED.
dsets.c(6750): (col. 5) remark: LOOP WAS VECTORIZED.
dsets.c(5254): (col. 5) remark: LOOP WAS VECTORIZED.
dsets.c(5268): (col. 5) remark: LOOP WAS VECTORIZED.
dsets.c(5282): (col. 5) remark: LOOP WAS VECTORIZED.
dsets.c(5296): (col. 5) remark: LOOP WAS VECTORIZED.
dsets.c(621): (col. 9) remark: LOOP WAS VECTORIZED.
dsets.c(414): (col. 13) remark: LOOP WAS VECTORIZED.
dsets.c(1363): (col. 13) remark: LOOP WAS VECTORIZED.
  CCLD   dsets
  CC     cmpd_dset.o
cmpd_dset.c(1784): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   cmpd_dset
  CC     filter_fail.o
  CCLD   filter_fail
  CC     extend.o
extend.c(260): (col. 9) remark: LOOP WAS VECTORIZED.
  CCLD   extend
  CC     external.o
external.c(621): (col. 2) remark: LOOP WAS VECTORIZED.
  CCLD   external
  CC     efc.o
  CCLD   efc
  CC     objcopy.o
objcopy.c(2257): (col. 9) remark: LOOP WAS VECTORIZED.
objcopy.c(2600): (col. 9) remark: LOOP WAS VECTORIZED.
objcopy.c(2792): (col. 5) remark: LOOP WAS VECTORIZED.
objcopy.c(2922): (col. 9) remark: LOOP WAS VECTORIZED.
  CCLD   objcopy
  CC     links.o
links.c(3794): (col. 9) remark: LOOP WAS VECTORIZED.
links.c(12129): (col. 9) remark: LOOP WAS VECTORIZED.
links.c(12161): (col. 9) remark: LOOP WAS VECTORIZED.
  CCLD   links
  CC     unlink.o
  CCLD   unlink
  CC     big.o
big.c(639): (col. 11) remark: LOOP WAS VECTORIZED.
big.c(526): (col. 2) remark: LOOP WAS VECTORIZED.
big.c(438): (col. 2) remark: LOOP WAS VECTORIZED.
  CCLD   big
  CC     mtime.o
  CCLD   mtime
  CC     fillval.o
fillval.c(1873): (col. 2) remark: BLOCK WAS VECTORIZED.
fillval.c(1574): (col. 5) remark: LOOP WAS VECTORIZED.
fillval.c(1654): (col. 5) remark: LOOP WAS VECTORIZED.
fillval.c(1708): (col. 5) remark: LOOP WAS VECTORIZED.
fillval.c(902): (col. 9) remark: LOOP WAS VECTORIZED.
fillval.c(1242): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   fillval
  CC     mount.o
  CCLD   mount
  CC     flush1.o
  CCLD   flush1
  CC     flush2.o
  CCLD   flush2
  CC     app_ref.o
  CCLD   app_ref
  CC     enum.o
  CCLD   enum
  CC     set_extent.o
set_extent.c(920): (col. 5) remark: LOOP WAS VECTORIZED.
set_extent.c(1535): (col. 5) remark: LOOP WAS VECTORIZED.
set_extent.c(414): (col. 5) remark: LOOP WAS VECTORIZED.
set_extent.c(2085): (col. 5) remark: LOOP WAS VECTORIZED.
set_extent.c(2412): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   set_extent
  CC     ttsafe.o
  CC     ttsafe_dcreate.o
  CC     ttsafe_error.o
  CC     ttsafe_cancel.o
  CC     ttsafe_acreate.o
  CCLD   ttsafe
  CC     getname.o
  CCLD   getname
  CC     vfd.o
vfd.c(707): (col. 9) remark: LOOP WAS VECTORIZED.
vfd.c(960): (col. 5) remark: LOOP WAS VECTORIZED.
vfd.c(1034): (col. 9) remark: LOOP WAS VECTORIZED.
  CCLD   vfd
  CC     ntypes.o
ntypes.c(2889): (col. 16) remark: LOOP WAS VECTORIZED.
ntypes.c(95): (col. 9) remark: LOOP WAS VECTORIZED.
ntypes.c(2580): (col. 5) remark: LOOP WAS VECTORIZED.
ntypes.c(2709): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   ntypes
  CC     dangle.o
  CCLD   dangle
  CC     dtransform.o
dtransform.c(333): (col. 8) remark: LOOP WAS VECTORIZED.
  CCLD   dtransform
  CC     reserved.o
  CCLD   reserved
  CC     cross_read.o
cross_read.c(173): (col. 9) remark: FUSED LOOP WAS VECTORIZED.
cross_read.c(235): (col. 9) remark: FUSED LOOP WAS VECTORIZED.
cross_read.c(297): (col. 2) remark: FUSED LOOP WAS VECTORIZED.
cross_read.c(359): (col. 9) remark: FUSED LOOP WAS VECTORIZED.
  CCLD   cross_read
  CC     freespace.o
  CCLD   freespace
  CC     mf.o
  CCLD   mf
  CC     btree2.o
btree2.c(6876): (col. 5) remark: LOOP WAS VECTORIZED.
btree2.c(6459): (col. 5) remark: LOOP WAS VECTORIZED.
btree2.c(2785): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   btree2
  CC     fheap.o
  CCLD   fheap
  CC     error_test.o
  CCLD   error_test
  CC     err_compat.o
  CCLD   err_compat
  CC     tcheck_version.o
  CCLD   tcheck_version
  CC     testmeta.o
  CCLD   testmeta
  CC     links_env.o
  CCLD   links_env
make[1]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/test'
Making all in tools
make[1]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools'
Making all in lib
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/lib'
  CC     h5tools.lo
h5tools.c(676): warning #188: enumerated type mixed with another type
      H5T_class_t tclass = -1;
                           ^

h5tools.c(3333): warning #188: enumerated type mixed with another type
      H5S_class_t space_type = -1;
                               ^

h5tools.c(4161): (col. 5) remark: LOOP WAS VECTORIZED.
h5tools.c(1678): (col. 5) remark: LOOP WAS VECTORIZED.
h5tools.c(2777): (col. 22) remark: PARTIAL LOOP WAS VECTORIZED.
  CC     h5tools_str.lo
  CC     h5tools_utils.lo
  CC     h5diff.lo
h5diff.c(608): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(lnk_info.trg_path);
          ^

h5diff.c(720): warning #167: argument of type "const char *" is incompatible with parameter of type "char *restrict"
              HDstrcpy(obj1fullname, "/");
              ^

h5diff.c(721): warning #167: argument of type "const char *" is incompatible with parameter of type "char *restrict"
              HDstrcat(obj1fullname, objname1);
              ^

h5diff.c(724): warning #167: argument of type "const char *" is incompatible with parameter of type "char *restrict"
              HDstrcpy(obj1fullname, objname1);
              ^

h5diff.c(729): warning #167: argument of type "const char *" is incompatible with parameter of type "char *restrict"
              HDstrcpy(obj2fullname, "/");
              ^

h5diff.c(730): warning #167: argument of type "const char *" is incompatible with parameter of type "char *restrict"
              HDstrcat(obj2fullname, objname2);
              ^

h5diff.c(733): warning #167: argument of type "const char *" is incompatible with parameter of type "char *restrict"
              HDstrcpy(obj2fullname, objname2);
              ^

h5diff.c(774): warning #188: enumerated type mixed with another type
                  obj1type = oinfo1.type;
                           ^

h5diff.c(828): warning #188: enumerated type mixed with another type
                  obj2type = oinfo2.type;
                           ^

h5diff.c(848): warning #167: argument of type "const char *" is incompatible with parameter of type "char *restrict"
          HDstrcat(obj1fullname, "/");
          ^

h5diff.c(850): warning #167: argument of type "const char *" is incompatible with parameter of type "char *restrict"
          HDstrcat(obj2fullname, "/");
          ^

h5diff.c(895): warning #188: enumerated type mixed with another type
              obj1type = trg_linfo1.trg_type;
                       ^

h5diff.c(928): warning #188: enumerated type mixed with another type
              obj2type = trg_linfo2.trg_type;
                       ^

h5diff.c(1024): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(obj1fullname);
          ^

h5diff.c(1026): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(obj2fullname);
          ^

h5diff.c(1030): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(trg_linfo1.trg_path);
          ^

h5diff.c(1032): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(trg_linfo2.trg_path);
          ^

h5diff.c(1089): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          grp1_path = grp1;
                    ^

h5diff.c(1091): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          grp2_path = grp2;
                    ^

h5diff.c(1571): warning #188: enumerated type mixed with another type
                  obj1type = linkinfo1.trg_type;
                           ^

h5diff.c(1604): warning #188: enumerated type mixed with another type
                  obj2type = linkinfo2.trg_type;
                           ^

h5diff.c(1642): warning #188: enumerated type mixed with another type
                      obj1type = linkinfo1.trg_type;
                               ^

h5diff.c(1676): warning #188: enumerated type mixed with another type
                      obj2type = linkinfo2.trg_type;
                               ^

h5diff.c(1734): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(linkinfo1.trg_path);
          ^

h5diff.c(1736): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(linkinfo2.trg_path);
          ^

h5diff.c(1962): warning #188: enumerated type mixed with another type
                          parallel_print("<%s> is of type %s and <%s> is of type %s\n", path1, get_type(linkinfo1.trg_type), path2, get_type(linkinfo2.trg_type));
                                                                                                        ^

h5diff.c(1962): warning #188: enumerated type mixed with another type
                          parallel_print("<%s> is of type %s and <%s> is of type %s\n", path1, get_type(linkinfo1.trg_type), path2, get_type(linkinfo2.trg_type));
                                                                                                                                             ^

h5diff.c(1971): warning #188: enumerated type mixed with another type
                                 options, linkinfo1.trg_type);
                                          ^

h5diff.c(2014): warning #188: enumerated type mixed with another type
                              parallel_print("<%s> is of type %s and <%s> is of type %s\n", path1, get_type(linkinfo1.trg_type), path2, get_type(linkinfo2.trg_type));
                                                                                                            ^

h5diff.c(2014): warning #188: enumerated type mixed with another type
                              parallel_print("<%s> is of type %s and <%s> is of type %s\n", path1, get_type(linkinfo1.trg_type), path2, get_type(linkinfo2.trg_type));
                                                                                                                                                 ^

h5diff.c(2022): warning #188: enumerated type mixed with another type
                                    options, linkinfo1.trg_type);
                                             ^

h5diff.c(2060): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(linkinfo1.trg_path);
          ^

h5diff.c(2062): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(linkinfo2.trg_path);
          ^

h5diff.c(2103): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(linkinfo1.trg_path);
          ^

h5diff.c(2105): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(linkinfo2.trg_path);
          ^

  CC     h5diff_array.lo
h5diff_array.c(509): warning #556: a value of type "unsigned char *" cannot be assigned to an entity of type "char *"
                  s1 = mem1;
                     ^

h5diff_array.c(512): warning #556: a value of type "unsigned char *" cannot be assigned to an entity of type "char *"
                  s2 = mem2;
                     ^

h5diff_array.c(544): warning #167: argument of type "char *" is incompatible with parameter of type "unsigned char *"
                          s1 + u,
                          ^

h5diff_array.c(545): warning #167: argument of type "char *" is incompatible with parameter of type "unsigned char *"
                          s2 + u, /* offset */
                          ^

h5diff_array.c(2679): (col. 13) remark: LOOP WAS VECTORIZED.
  CC     h5diff_attr.lo
  CC     h5diff_dset.lo
  CC     h5diff_util.lo
  CC     h5trav.lo
  CC     h5tools_filters.lo
  CC     h5tools_ref.lo
  CC     h5tools_type.lo
  CCLD   libh5tools.la
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/lib'
Making all in h5diff
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5diff'
  CC     h5diff_main.o
h5diff_main.c(102): warning #177: label "out" was declared but never referenced
  out:
  ^

  CC     h5diff_common.o
h5diff_common.c(157): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
              exclude_node->obj_path = opt_arg;
                                     ^

  CCLD   h5diff
  CC     h5diffgentest.o
h5diffgentest.c(3443): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
      comp1_buf.str_vlen = comp1_buf.str_vlen_repeat = vlen_str_buf;
                                                     ^

h5diffgentest.c(3444): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
      comp2_buf.str_vlen = comp2_buf.str_vlen_repeat = vlen_str_buf;
                                                     ^

h5diffgentest.c(3445): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
      comp3_buf.str_vlen = comp3_buf.str_vlen_repeat = vlen_str_buf;
                                                     ^

h5diffgentest.c(3446): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
      comp4_buf.str_vlen = comp4_buf.str_vlen_repeat = vlen_str_buf;
                                                     ^

h5diffgentest.c(3447): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
      comp5_buf.str_vlen = comp5_buf.str_vlen_repeat = vlen_str_buf;
                                                     ^

h5diffgentest.c(3448): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
      comp6_buf.str_vlen = comp6_buf.str_vlen_repeat = vlen_str_buf;
                                                     ^

h5diffgentest.c(3449): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
      comp7_buf.str_vlen = comp7_buf.str_vlen_repeat = vlen_str_buf;
                                                     ^

h5diffgentest.c(3450): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
      comp8_buf.str_vlen = comp8_buf.str_vlen_repeat = vlen_str_buf;
                                                     ^

h5diffgentest.c(3451): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
      comp9_buf.str_vlen = comp9_buf.str_vlen_repeat = vlen_str_buf;
                                                     ^

h5diffgentest.c(3487): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          comp1_buf.str_array_vlen[i] = comp1_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
                                                                          ^

h5diffgentest.c(3488): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          comp2_buf.str_array_vlen[i] = comp2_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
                                                                          ^

h5diffgentest.c(3489): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          comp3_buf.str_array_vlen[i] = comp3_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
                                                                          ^

h5diffgentest.c(3490): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          comp4_buf.str_array_vlen[i] = comp4_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
                                                                          ^

h5diffgentest.c(3491): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          comp5_buf.str_array_vlen[i] = comp5_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
                                                                          ^

h5diffgentest.c(3492): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          comp6_buf.str_array_vlen[i] = comp6_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
                                                                          ^

h5diffgentest.c(3493): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          comp7_buf.str_array_vlen[i] = comp7_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
                                                                          ^

h5diffgentest.c(3494): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          comp8_buf.str_array_vlen[i] = comp8_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
                                                                          ^

h5diffgentest.c(3495): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
          comp9_buf.str_array_vlen[i] = comp9_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
                                                                          ^

h5diffgentest.c(4215): (col. 9) remark: LOOP WAS VECTORIZED.
h5diffgentest.c(5188): (col. 5) remark: LOOP WAS VECTORIZED.
h5diffgentest.c(5239): (col. 9) remark: LOOP WAS VECTORIZED.
h5diffgentest.c(5265): (col. 9) remark: LOOP WAS VECTORIZED.
h5diffgentest.c(397): (col. 9) remark: BLOCK WAS VECTORIZED.
h5diffgentest.c(3485): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   h5diffgentest
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5diff'
Making all in h5ls
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5ls'
  CC     h5ls.o
h5ls.c(1910): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
              buf = lnk_info.trg_path;
                  ^

h5ls.c(1968): warning #556: a value of type "const char *" cannot be assigned to an entity of type "char *"
              buf = lnk_info.trg_path;
                  ^

  CCLD   h5ls
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5ls'
Making all in misc
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/misc'
  CC     h5debug.o
  CCLD   h5debug
  CC     h5repart.o
  CCLD   h5repart
  CC     h5mkgrp.o
  CCLD   h5mkgrp
  CC     h5repart_gentest.o
h5repart_gentest.c(69): (col. 9) remark: LOOP WAS VECTORIZED.
  CCLD   h5repart_gentest
  CC     talign.o
talign.c(90): warning #266: function "h5tools_get_native_type" declared implicitly
      fix = h5tools_get_native_type(cmp);
            ^

  CCLD   talign
  CC     repart_test.o
  CCLD   repart_test
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/misc'
Making all in h5import
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5import'
  CC     h5import.o
h5import.c(2108): (col. 3) remark: LOOP WAS VECTORIZED.
  CCLD   h5import
  CC     h5importtest.o
  CCLD   h5importtest
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5import'
Making all in h5repack
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5repack'
  CC     h5repack.o
h5repack.c(101): (col. 9) remark: LOOP WAS VECTORIZED.
  CC     h5repack_copy.o
  CC     h5repack_filters.o
h5repack_filters.c(283): (col. 13) remark: LOOP WAS VECTORIZED.
h5repack_filters.c(336): (col. 13) remark: LOOP WAS VECTORIZED.
  CC     h5repack_opttable.o
h5repack_opttable.c(37): (col. 9) remark: LOOP WAS VECTORIZED.
  CC     h5repack_parse.o
  CC     h5repack_refs.o
  CC     h5repack_verify.o
  CC     h5repack_main.o
h5repack_main.c(110): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   h5repack
  CC     testh5repack_detect_szip.o
testh5repack_detect_szip.c(47): warning #266: function "h5tools_setprogname" declared implicitly
      h5tools_setprogname(PROGRAMNAME);
      ^

testh5repack_detect_szip.c(48): warning #266: function "h5tools_setstatus" declared implicitly
      h5tools_setstatus(EXIT_SUCCESS);
      ^

  CCLD   testh5repack_detect_szip
  CC     h5repacktst.o
h5repacktst.c(1387): (col. 5) remark: BLOCK WAS VECTORIZED.
h5repacktst.c(1687): (col. 9) remark: LOOP WAS VECTORIZED.
h5repacktst.c(1698): (col. 9) remark: LOOP WAS VECTORIZED.
h5repacktst.c(1720): (col. 9) remark: LOOP WAS VECTORIZED.
h5repacktst.c(1731): (col. 9) remark: LOOP WAS VECTORIZED.
h5repacktst.c(4781): (col. 5) remark: LOOP WAS VECTORIZED.
h5repacktst.c(5217): (col. 5) remark: LOOP WAS VECTORIZED.
h5repacktst.c(5345): (col. 9) remark: LOOP WAS VECTORIZED.
h5repacktst.c(3556): (col. 9) remark: LOOP WAS VECTORIZED.
h5repacktst.c(3646): (col. 9) remark: LOOP WAS VECTORIZED.
h5repacktst.c(4075): (col. 9) remark: LOOP WAS VECTORIZED.
h5repacktst.c(2845): (col. 9) remark: LOOP WAS VECTORIZED.
h5repacktst.c(2166): (col. 9) remark: LOOP WAS VECTORIZED.
h5repacktst.c(2578): (col. 9) remark: LOOP WAS VECTORIZED.
  CCLD   h5repacktst
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5repack'
Making all in h5jam
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5jam'
  CC     h5jam.o
  CCLD   h5jam
  CC     h5unjam.o
  CCLD   h5unjam
  CC     tellub.o
  CCLD   tellub
  CC     h5jamgentest.o
h5jamgentest.c(261): (col. 3) remark: LOOP WAS VECTORIZED.
h5jamgentest.c(283): (col. 3) remark: LOOP WAS VECTORIZED.
  CCLD   h5jamgentest
  CC     getub.o
  CCLD   getub
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5jam'
Making all in h5copy
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5copy'
  CC     h5copy.o
h5copy.c(467): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(linkinfo.trg_path);
          ^

h5copy.c(499): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
          HDfree(linkinfo.trg_path);
          ^

  CCLD   h5copy
  CC     h5copygentest.o
h5copygentest.c(894): warning #266: function "h5tools_setprogname" declared implicitly
      h5tools_setprogname(PROGRAMNAME);
      ^

h5copygentest.c(895): warning #266: function "h5tools_setstatus" declared implicitly
      h5tools_setstatus(EXIT_SUCCESS);
      ^

  CCLD   h5copygentest
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5copy'
Making all in h5stat
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5stat'
  CC     h5stat.o
  CCLD   h5stat
  CC     h5stat_gentest.o
  CCLD   h5stat_gentest
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5stat'
Making all in h5dump
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5dump'
  CC     h5dump.o
h5dump.c(2578): warning #279: controlling expression is constant
      begin_obj(dump_header_format->databegin, (const char *)NULL,
      ^

  CCLD   h5dump
  CC     h5dumpgentest.o
h5dumpgentest.c(7084): (col. 5) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(7099): (col. 5) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(7122): (col. 5) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(436): (col. 5) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(327): (col. 10) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(340): (col. 10) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(1275): (col. 5) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(1297): (col. 5) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(372): (col. 10) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(386): (col. 10) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(1422): (col. 5) remark: BLOCK WAS VECTORIZED.
h5dumpgentest.c(1476): (col. 5) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(2416): (col. 5) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(2430): (col. 5) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(5950): (col. 5) remark: LOOP WAS VECTORIZED.
h5dumpgentest.c(7043): (col. 10) remark: LOOP WAS VECTORIZED.
  CCLD   h5dumpgentest
  CC     binread.o
  CCLD   binread
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools/h5dump'
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools'
make[1]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/tools'
Making all in .
make[1]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7'
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/perform'
  CC     sio_perf.o
sio_perf.c(755): (col. 47) remark: LOOP WAS VECTORIZED.
sio_perf.c(959): (col. 5) remark: PARTIAL LOOP WAS VECTORIZED.
  CC     sio_engine.o
sio_engine.c(261): (col. 15) remark: LOOP WAS VECTORIZED.
sio_engine.c(261): (col. 15) remark: LOOP WAS VECTORIZED.
sio_engine.c(446): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     sio_timer.o
  CCLD   h5perf_serial
  CC     iopipe.o
  CCLD   iopipe
  CC     chunk.o
  CCLD   chunk
  CC     overhead.o
  CCLD   overhead
  CC     zip_perf.o
  CCLD   zip_perf
  CC     perf_meta.o
  CCLD   perf_meta
  CC     perf.o
  CCLD   perf
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/perform'
make[1]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7'
Making all in fortran
make[1]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/fortran'
Making all in src
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/fortran/src'
  FC     H5test_kind_SIZEOF.o
  FCLD   H5test_kind
./H5test_kind > H5fortran_detect.f90
  FC     H5fortran_detect.o
  FCLD   H5fortran_detect
./H5fortran_detect > H5fort_type_defines.h
  CC     H5match_types.o
H5match_types.c(356): (col. 5) remark: FUSED LOOP WAS VECTORIZED.
H5match_types.c(423): (col. 5) remark: BLOCK WAS VECTORIZED.
  CCLD   H5match_types
./H5match_types
make  all-am
make[3]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/fortran/src'
  FC     H5fortran_types.lo
  FC     H5f90global.lo
  FC     H5_ff.lo
  FC     H5Aff.lo
  FC     H5Dff.lo
  FC     H5Eff.lo
  FC     H5Fff.lo
  FC     H5Gff.lo
  FC     H5Iff.lo
  FC     H5Lff.lo
  FC     H5Off.lo
  FC     H5Pff.lo
  FC     H5Rff.lo
  FC     H5Sff.lo
  FC     H5Tff.lo
  FC     H5Zff.lo
  FC     H5_DBLE_InterfaceInclude.lo
  CC     H5f90kit.lo
  CC     H5_f.lo
H5_f.c(313): (col. 5) remark: BLOCK WAS VECTORIZED.
H5_f.c(361): (col. 5) remark: BLOCK WAS VECTORIZED.
H5_f.c(430): (col. 5) remark: BLOCK WAS VECTORIZED.
H5_f.c(509): (col. 7) remark: BLOCK WAS VECTORIZED.
H5_f.c(538): (col. 7) remark: BLOCK WAS VECTORIZED.
H5_f.c(577): (col. 7) remark: BLOCK WAS VECTORIZED.
  CC     H5Af.lo
  CC     H5Df.lo
H5Df.c(1714): (col. 3) remark: LOOP WAS VECTORIZED.
H5Df.c(1432): (col. 3) remark: LOOP WAS VECTORIZED.
H5Df.c(1298): (col. 3) remark: LOOP WAS VECTORIZED.
  CC     H5Ef.lo
  CC     H5Ff.lo
H5Ff.c(466): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     H5Gf.lo
  CC     H5If.lo
  CC     H5Lf.lo
  CC     H5Of.lo
  CC     H5Pf.lo
H5Pf.c(3387): (col. 6) remark: LOOP WAS VECTORIZED.
H5Pf.c(3342): (col. 6) remark: LOOP WAS VECTORIZED.
H5Pf.c(3108): (col. 3) remark: PARTIAL LOOP WAS VECTORIZED.
H5Pf.c(1485): (col. 6) remark: LOOP WAS VECTORIZED.
  CC     H5Rf.lo
  CC     H5Sf.lo
H5Sf.c(995): (col. 7) remark: LOOP WAS VECTORIZED.
H5Sf.c(782): (col. 5) remark: LOOP WAS VECTORIZED.
H5Sf.c(660): (col. 5) remark: LOOP WAS VECTORIZED.
H5Sf.c(579): (col. 5) remark: LOOP WAS VECTORIZED.
H5Sf.c(293): (col. 5) remark: LOOP WAS VECTORIZED.
H5Sf.c(245): (col. 7) remark: LOOP WAS VECTORIZED.
  CC     H5Tf.lo
H5Tf.c(1103): (col. 5) remark: LOOP WAS VECTORIZED.
  CC     H5Zf.lo
  FC     HDF5.lo
  FCLD   libhdf5_fortran.la
make[3]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/fortran/src'
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/fortran/src'
Making all in test
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/fortran/test'
  FC     tf.lo
  CC     t.lo
  FCLD   libh5test_fortran.la
  FC     fortranlib_test-fortranlib_test.o
  FC     fortranlib_test-tH5F.o
  FC     fortranlib_test-tH5D.o
  FC     fortranlib_test-tH5R.o
  FC     fortranlib_test-tH5S.o
  FC     fortranlib_test-tH5T.o
  FC     fortranlib_test-tH5VL.o
  FC     fortranlib_test-tH5Z.o
  FC     fortranlib_test-tH5Sselect.o
  FC     fortranlib_test-tH5P.o
  FC     fortranlib_test-tH5A.o
  FC     fortranlib_test-tH5I.o
  FC     fortranlib_test-tH5G.o
  FC     fortranlib_test-tH5E.o
  FCLD   fortranlib_test
/opt/intel/Compiler/11.1/064/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
  FC     fflush1.o
  FCLD   fflush1
/opt/intel/Compiler/11.1/064/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
  FC     fflush2.o
  FCLD   fflush2
/opt/intel/Compiler/11.1/064/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
  FC     fortranlib_test_1_8.o
  FC     tH5F.o
  FC     tH5O.o
  FC     tH5A_1_8.o
  FC     tH5G_1_8.o
  FCLD   fortranlib_test_1_8
/opt/intel/Compiler/11.1/064/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/fortran/test'
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/fortran'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/fortran'
make[1]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/fortran'
Making all in hl
make[1]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl'
Making all in src
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/src'
  CC     H5DS.lo
  CC     H5IM.lo
  CC     H5LT.lo
  CC     H5LTanalyze.lo
H5LTanalyze.c(2004): warning #266: function "isatty" declared implicitly
  	b->yy_is_interactive = file ? (isatty( fileno(file) ) > 0) : 0;
  	                               ^

H5LTanalyze.l(187): warning #1011: missing return statement at end of non-void function "H5LTyyerror"
  }
  ^

H5LTanalyze.c(2115): (col. 2) remark: LOOP WAS VECTORIZED.
  CC     H5LTparse.lo
H5LTparse.y(270): warning #188: enumerated type mixed with another type
                                      str_pad = H5T_STR_NULLTERM;
                                              ^

H5LTparse.y(272): warning #188: enumerated type mixed with another type
                                      str_pad = H5T_STR_NULLPAD;
                                              ^

H5LTparse.y(274): warning #188: enumerated type mixed with another type
                                      str_pad = H5T_STR_SPACEPAD;
                                              ^

H5LTparse.y(302): warning #188: enumerated type mixed with another type
                                  H5Tset_strpad(str_id, str_pad);
                                                        ^

  CC     H5PT.lo
  CC     H5TB.lo
  CCLD   libhdf5_hl.la
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/src'
Making all in test
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/test'
  CC     test_lite.o
  CCLD   test_lite
  CC     test_image.o
  CCLD   test_image
  CC     test_table.o
  CCLD   test_table
  CC     test_ds.o
  CCLD   test_ds
  CC     test_packet.o
  CCLD   test_packet
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/test'
Making all in tools
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/tools'
Making all in gif2h5
make[3]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/tools/gif2h5'
  CC     gif2hdf.o
  CC     gif2mem.o
  CC     decompress.o
  CC     gifread.o
  CC     writehdf.o
  CCLD   gif2h5
  CC     hdf2gif.o
hdf2gif.c(191): (col. 13) remark: LOOP WAS VECTORIZED.
hdf2gif.c(208): (col. 9) remark: LOOP WAS VECTORIZED.
  CC     hdfgifwr.o
hdfgifwr.c(129): (col. 5) remark: LOOP WAS VECTORIZED.
  CCLD   h52gif
  CC     h52gifgentst.o
  CCLD   h52gifgentst
make[3]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/tools/gif2h5'
make[3]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/tools'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/tools'
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/tools'
Making all in fortran
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/fortran'
Making all in src
make[3]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/fortran/src'
  CC     H5LTfc.lo
  CC     H5IMfc.lo
  CC     H5IMcc.lo
  CC     H5TBfc.lo
H5TBfc.c(878): (col. 5) remark: LOOP WAS VECTORIZED.
H5TBfc.c(81): (col. 5) remark: PARTIAL LOOP WAS VECTORIZED.
H5TBfc.c(81): (col. 5) remark: PARTIAL LOOP WAS VECTORIZED.
  FC     H5LTff.lo
  FC     H5IMff.lo
  FC     H5TBff.lo
  FCLD   libhdf5hl_fortran.la
make[3]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/fortran/src'
Making all in test
make[3]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/fortran/test'
  FC     tstlite.o
  FCLD   tstlite
/opt/intel/Compiler/11.1/064/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
  FC     tstimage.o
  FCLD   tstimage
/opt/intel/Compiler/11.1/064/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
  FC     tsttable.o
  FCLD   tsttable
/opt/intel/Compiler/11.1/064/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
make[3]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/fortran/test'
make[3]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/fortran'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/fortran'
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl/fortran'
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl'
make[1]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/hl'
Making all in perform
make[1]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/perform'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/software/hdf/5/1.8.7/hdf5-1.8.7/perform'
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking shell variables initial values... done
checking if basename works... yes
checking if xargs works... yes
checking for cached host... none
checking for config x86_64-unknown-linux-gnu... no
checking for config x86_64-unknown-linux-gnu... no
checking for config unknown-linux-gnu... no
checking for config unknown-linux-gnu... no
checking for config x86_64-linux-gnu... no
checking for config x86_64-linux-gnu... no
checking for config x86_64-unknown... no
checking for config linux-gnu... found
compiler '/opt/intel/Compiler/11.0/074/bin/intel64/icc' is Intel icc-11.0
CC_BASENAME is icc.
compiler '/opt/intel/Compiler/11.1/064/bin/intel64/ifort' is Intel ifort-11.1
checking for config ./config/site-specific/host-redqueen.rcs.manchester.ac.uk... no
checking for config ./config/site-specific/host-rcs.manchester.ac.uk... no
checking for config ./config/site-specific/host-manchester.ac.uk... no
checking for config ./config/site-specific/host-ac.uk... no
checking for config ./config/site-specific/host-uk... no
checking for gcc... /opt/intel/Compiler/11.0/074/bin/intel64/icc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/intel/Compiler/11.0/074/bin/intel64/icc accepts -g... yes
checking for /opt/intel/Compiler/11.0/074/bin/intel64/icc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of /opt/intel/Compiler/11.0/074/bin/intel64/icc... gcc3
checking if unsupported combinations of configure options are allowed... no
checking if Fortran interface enabled... yes
checking whether we are using the GNU Fortran compiler... no
checking whether /opt/intel/Compiler/11.1/064/bin/intel64/ifort accepts -g... yes
checking for Fortran flag to compile .f90 files... none
checking whether we are using the GNU Fortran compiler... (cached) no
checking whether /opt/intel/Compiler/11.1/064/bin/intel64/ifort accepts -g... (cached) yes
checking what /opt/intel/Compiler/11.1/064/bin/intel64/ifort does with modules... module.mod
checking how /opt/intel/Compiler/11.1/064/bin/intel64/ifort finds modules... -I
checking how to get verbose linking output from /opt/intel/Compiler/11.1/064/bin/intel64/ifort... -v
checking for Fortran libraries of /opt/intel/Compiler/11.1/064/bin/intel64/ifort... 
-L/opt/intel/Compiler/11.1/064/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../.. -L/lib64 -L/lib -L/usr/lib64 -L/usr/lib
-lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking if Fortran compiler supports intrinsic SIZEOF... yes
checking if Fortran default REAL is DOUBLE PRECISION... no
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking if c++ interface enabled... no
checking for perl... perl
checking for ar... ar
checking whether make sets $(MAKE)... (cached) yes
checking for tr... /usr/bin/tr
checking if srcdir= and time commands work together... no
checking if shared Fortran libraries are supported... yes
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by /opt/intel/Compiler/11.0/074/bin/intel64/icc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 98304
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for archiver  <at> FILE support...  <at> 
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from /opt/intel/Compiler/11.0/074/bin/intel64/icc
object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... /opt/intel/Compiler/11.0/074/bin/intel64/icc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if /opt/intel/Compiler/11.0/074/bin/intel64/icc supports -fno-rtti -fno-exceptions... yes
checking for /opt/intel/Compiler/11.0/074/bin/intel64/icc option to produce PIC... -fPIC -DPIC
checking if /opt/intel/Compiler/11.0/074/bin/intel64/icc PIC flag -fPIC -DPIC works... yes
checking if /opt/intel/Compiler/11.0/074/bin/intel64/icc static flag -static works... yes
checking if /opt/intel/Compiler/11.0/074/bin/intel64/icc supports -c -o file.o... yes
checking if /opt/intel/Compiler/11.0/074/bin/intel64/icc supports -c -o file.o... (cached) yes
checking whether the /opt/intel/Compiler/11.0/074/bin/intel64/icc linker (/usr/bin/ld -m
elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dlopen... yes
checking whether a program can dlopen itself... yes
checking whether a statically linked program can dlopen itself... no
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for /opt/intel/Compiler/11.1/064/bin/intel64/ifort option to produce PIC... -fPIC
checking if /opt/intel/Compiler/11.1/064/bin/intel64/ifort PIC flag -fPIC works... yes
checking if /opt/intel/Compiler/11.1/064/bin/intel64/ifort static flag -static works... yes
checking if /opt/intel/Compiler/11.1/064/bin/intel64/ifort supports -c -o file.o... yes
checking if /opt/intel/Compiler/11.1/064/bin/intel64/ifort supports -c -o file.o... (cached) yes
checking whether the /opt/intel/Compiler/11.1/064/bin/intel64/ifort linker (/usr/bin/ld -m
elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
fixing $wl in libtool
checking if we should install only statically linked executables... no
checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes
checking make... checking how make searches directories... VPATH=DIR1 DIR2 ...
checking whether make will build with undefined variables... yes
checking for production mode... production
checking for ceil in -lm... yes
checking for ANSI C header files... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking for difftime... yes
checking for gettimeofday... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking for sys/stat.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/types.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking setjmp.h usability... yes
checking setjmp.h presence... yes
checking for setjmp.h... yes
checking features.h usability... yes
checking features.h presence... yes
checking for features.h... yes
checking for stdint.h... (cached) yes
checking io.h usability... no
checking io.h presence... no
checking for io.h... no
checking winsock.h usability... no
checking winsock.h presence... no
checking for winsock.h... no
checking sys/timeb.h usability... yes
checking sys/timeb.h presence... yes
checking for sys/timeb.h... yes
checking if libtool needs -no-undefined flag to build shared libraries... no
checking if configure should try to set up large file support... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking if large (64-bit) files are supported on this system.... yes
checking for lseek64... yes
checking for fseeko64... yes
checking for ftello64... yes
checking for ftruncate64... yes
checking for fseeko... yes
checking for ftello... yes
checking for stat64... yes
checking for fstat64... yes
checking for off_t... yes
checking for size_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking whether byte ordering is bigendian... no
checking size of char... 1
checking size of short... 2
checking size of int... 4
checking size of unsigned... 4
checking size of long... 8
checking size of long long... 8
checking size of __int64... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 16
checking size of int8_t... 1
checking size of uint8_t... 1
checking size of int_least8_t... 1
checking size of uint_least8_t... 1
checking size of int_fast8_t... 1
checking size of uint_fast8_t... 1
checking size of int16_t... 2
checking size of uint16_t... 2
checking size of int_least16_t... 2
checking size of uint_least16_t... 2
checking size of int_fast16_t... 8
checking size of uint_fast16_t... 8
checking size of int32_t... 4
checking size of uint32_t... 4
checking size of int_least32_t... 4
checking size of uint_least32_t... 4
checking size of int_fast32_t... 8
checking size of uint_fast32_t... 8
checking size of int64_t... 8
checking size of uint64_t... 8
checking size of int_least64_t... 8
checking size of uint_least64_t... 8
checking size of int_fast64_t... 8
checking size of uint_fast64_t... 8
checking size of size_t... 8
checking size of ssize_t... 8
checking size of ptrdiff_t... 8
checking size of off_t... 8
checking size of off64_t... 8
checking if dev_t is scalar... yes
checking for dmalloc library... suppressed
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for compress2 in -lz... yes
checking for compress2... yes
checking for szlib... suppressed
checking for pthread... suppressed
checking for thread safe support... no
checking for tm_gmtoff in struct tm... yes
checking for __tm_gmtoff in struct tm... no
checking for global timezone variable... no
checking whether struct tm is in sys/time.h or time.h... time.h
checking for struct tm.tm_zone... yes
checking for struct timezone... yes
checking whether gettimeofday() gives timezone... yes
checking for st_blocks in struct stat... yes
checking for _getvideoconfig... no
checking for gettextinfo... no
checking for GetConsoleScreenBufferInfo... no
checking for _scrsize... no
checking for ioctl... yes
checking for struct videoconfig... no
checking for struct text_info... no
checking for TIOCGWINSZ... yes
checking for TIOCGETD... yes
checking for alarm... yes
checking for BSDgettimeofday... no
checking for fork... yes
checking for frexpf... yes
checking for frexpl... yes
checking for gethostname... yes
checking for getpwuid... yes
checking for getrusage... yes
checking for lstat... yes
checking for rand_r... yes
checking for random... yes
checking for setsysinfo... no
checking for signal... yes
checking for longjmp... yes
checking for setjmp... yes
checking for siglongjmp... yes
checking for sigsetjmp... no
checking for sigprocmask... yes
checking for snprintf... yes
checking for srandom... yes
checking for strdup... yes
checking for symlink... yes
checking for system... yes
checking for tmpfile... yes
checking for vasprintf... yes
checking for waitpid... yes
checking for vsnprintf... yes
checking if vsnprintf returns correct value... yes
checking if lone colon can be used as an argument... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for __attribute__ extension... yes
checking for __func__ extension... yes
checking for __FUNCTION__ extension... yes
checking for C99 designated initialization support... yes
checking how to print long long... %ld and %lu
checking Threads support system scope... yes
checking for gpfs... suppressed
checking for debug flags... none
checking whether function stack tracking is enabled... no
checking whether metadata trace file code is enabled... no
checking for API tracing... no
checking for instrumented library... no
checking whether to clear file buffers... yes
checking whether a memory checking tool will be used... no
checking for parallel support files... skipped
checking for I/O filters... all (shuffle,fletcher32,nbit,scaleoffset)
checking for Default Virtual File Driver definition... yes
checking for Direct Virtual File Driver support... no
checking whether exception handling functions is checked during data conversions... yes
checking whether data accuracy is guaranteed during data conversions... yes
checking if converting denormalized floating-point values is possible... yes
checking if converting floating-point values to long long is not working... false
checking if the machine has window style path name... no
checking if converting from long double to integers is accurate... yes
checking if converting from long double to integers works... yes
checking if accurately converting from integers to long double... yes
checking if accurately converting unsigned long to float values... yes
checking if accurately converting unsigned long long to floating-point values... yes
checking if accurately roundup converting floating-point to unsigned long long values... yes
checking if right maximum converting floating-point to unsigned long long values... no
checking if correctly converting long double to unsigned int values... yes
checking if compiling unsigned long long to floating-point typecasts work... yes
checking if compiling long long to floating-point typecasts work... yes
checking if converting unsigned long long to long double with precision... yes
checking if overflows normally converting floating-point to integer values... yes
checking if using special algorithm to convert long double to (unsigned) long values... no
checking if using special algorithm to convert (unsigned) long to long double values... no
checking if correctly converting long double to (unsigned) long long values... yes
checking if correctly converting (unsigned) long long to long double values... yes
checking if bad code for log2 routine is generated... no
checking if high level library is enabled... yes
checking additional programs should be built... no
checking if deprecated public symbols are available... yes
checking which version of public symbols to use by default... v18
checking Whether to perform strict file format checks... no
checking Whether to have library information embedded in the executables... yes
checking Whether to enable the h5dump packed bits feature... yes
checking if alignment restrictions are strictly enforced... no
configure: creating ./config.status
configure: creating ./config.lt
config.lt: creating libtool
config.status: creating src/libhdf5.settings
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating test/testcheck_version.sh
config.status: creating test/testerror.sh
config.status: creating test/H5srcdir_str.h
config.status: creating test/testlibinfo.sh
config.status: creating test/testlinks_env.sh
config.status: creating testpar/Makefile
config.status: creating testpar/testph5.sh
config.status: creating perform/Makefile
config.status: creating tools/Makefile
config.status: creating tools/h5dump/Makefile
config.status: creating tools/h5dump/testh5dump.sh
config.status: creating tools/h5dump/testh5dumpxml.sh
config.status: creating tools/h5ls/testh5ls.sh
config.status: creating tools/h5import/Makefile
config.status: creating tools/h5diff/Makefile
config.status: creating tools/h5jam/Makefile
config.status: creating tools/h5jam/testh5jam.sh
config.status: creating tools/h5repack/Makefile
config.status: creating tools/h5repack/h5repack.sh
config.status: creating tools/h5ls/Makefile
config.status: creating tools/h5copy/Makefile
config.status: creating tools/lib/Makefile
config.status: creating tools/misc/Makefile
config.status: creating tools/misc/h5cc
config.status: creating tools/misc/testh5repart.sh
config.status: creating tools/h5stat/testh5stat.sh
config.status: creating tools/h5stat/Makefile
config.status: creating examples/Makefile
config.status: creating examples/run-c-ex.sh
config.status: creating examples/testh5cc.sh
config.status: creating c++/Makefile
config.status: creating c++/src/Makefile
config.status: creating c++/src/h5c++
config.status: creating c++/test/Makefile
config.status: creating c++/test/H5srcdir_str.h
config.status: creating c++/examples/Makefile
config.status: creating c++/examples/run-c++-ex.sh
config.status: creating c++/examples/testh5c++.sh
config.status: creating fortran/Makefile
config.status: creating fortran/src/h5fc
config.status: creating fortran/src/Makefile
config.status: creating fortran/test/Makefile
config.status: creating fortran/testpar/Makefile
config.status: creating fortran/examples/Makefile
config.status: creating fortran/examples/run-fortran-ex.sh
config.status: creating fortran/examples/testh5fc.sh
config.status: creating hl/Makefile
config.status: creating hl/src/Makefile
config.status: creating hl/test/Makefile
config.status: creating hl/test/H5srcdir_str.h
config.status: creating hl/tools/Makefile
config.status: creating hl/tools/gif2h5/Makefile
config.status: creating hl/examples/Makefile
config.status: creating hl/examples/run-hlc-ex.sh
config.status: creating hl/c++/Makefile
config.status: creating hl/c++/src/Makefile
config.status: creating hl/c++/test/Makefile
config.status: creating hl/c++/examples/Makefile
config.status: creating hl/c++/examples/run-hlc++-ex.sh
config.status: creating hl/fortran/Makefile
config.status: creating hl/fortran/src/Makefile
config.status: creating hl/fortran/test/Makefile
config.status: creating hl/fortran/examples/Makefile
config.status: creating hl/fortran/examples/run-hlfortran-ex.sh
config.status: creating src/H5config.h
config.status: executing default-1 commands
creating src/H5pubconf.h
Post process src/libhdf5.settings
config.status: executing depfiles commands
config.status: executing libtool commands
	    SUMMARY OF THE HDF5 CONFIGURATION
	    =================================

General Information:
-------------------
		   HDF5 Version: 1.8.7
		  Configured on: Thu Jun 23 16:37:49 BST 2011
		  Configured by: mccssmb2@...
		 Configure mode: production
		    Host system: x86_64-unknown-linux-gnu
	      Uname information: Linux redqueen.rcs.manchester.ac.uk 2.6.18-238.1.1.el5 #1 SMP Tue Jan 18
18:49:37 EST 2011 x86_64 x86_64 x86_64 GNU/Linux
		       Byte sex: little-endian
		      Libraries: 
	     Installation point: /software/hdf/5/1.8.7/hdf5-1.8.7/hdf5

Compiling Options:
------------------
               Compilation Mode: production
                     C Compiler: /opt/intel/Compiler/11.0/074/bin/intel64/icc ( Intel(R) C Intel(R) 64 Compiler Version
11.0 Build 20081105 Package ID: l_cproc_p_11.0.074)
                         CFLAGS: 
                      H5_CFLAGS: -std=c99  -O3
                      AM_CFLAGS: 
                       CPPFLAGS: 
                    H5_CPPFLAGS: -D_POSIX_SOURCE   -DNDEBUG -UH5_DEBUG_API
                    AM_CPPFLAGS: -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE 
               Shared C Library: yes
               Static C Library: yes
  Statically Linked Executables: no
                        LDFLAGS: 
                     H5_LDFLAGS: 
                     AM_LDFLAGS: 
 	 	Extra libraries:  -lz -lm 
 		       Archiver: ar
 		 	 Ranlib: ranlib
 	      Debugged Packages: 
		    API Tracing: no

Languages:
----------
                        Fortran: yes
               Fortran Compiler: /opt/intel/Compiler/11.1/064/bin/intel64/ifort ( Intel(R) Fortran Intel(R) 64
Compiler Version 11.1 Build 20091130 Package ID: l_cprof_p_11.1.064)
                  Fortran Flags: 
               H5 Fortran Flags:  -O3
               AM Fortran Flags:  
         Shared Fortran Library: yes
         Static Fortran Library: yes

                            C++: no

Features:
---------
                  Parallel HDF5: no
             High Level library: yes
                   Threadsafety: no
            Default API Mapping: v18
 With Deprecated Public Symbols: yes
         I/O filters (external): deflate(zlib)
         I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
                            MPE: no
                     Direct VFD: no
                        dmalloc: no
Clear file buffers before write: yes
           Using memory checker: no
         Function Stack Tracing: no
                           GPFS: no
      Strict File Format Checks: no
   Optimization Instrumentation: no
       Large File Support (LFS): yes
             H5dump Packed Bits: yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking shell variables initial values... done
checking if basename works... yes
checking if xargs works... yes
checking for cached host... none
checking for config x86_64-unknown-linux-gnu... no
checking for config x86_64-unknown-linux-gnu... no
checking for config unknown-linux-gnu... no
checking for config unknown-linux-gnu... no
checking for config x86_64-linux-gnu... no
checking for config x86_64-linux-gnu... no
checking for config x86_64-unknown... no
checking for config linux-gnu... found
compiler '/opt/intel/Compiler/11.0/074/bin/intel64/icc' is Intel icc-11.0
CC_BASENAME is icc.
compiler '/opt/intel/Compiler/11.1/064/bin/intel64/ifort' is Intel ifort-11.1
checking for config ./config/site-specific/host-redqueen.rcs.manchester.ac.uk... no
checking for config ./config/site-specific/host-rcs.manchester.ac.uk... no
checking for config ./config/site-specific/host-manchester.ac.uk... no
checking for config ./config/site-specific/host-ac.uk... no
checking for config ./config/site-specific/host-uk... no
checking for gcc... /opt/intel/Compiler/11.0/074/bin/intel64/icc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/intel/Compiler/11.0/074/bin/intel64/icc accepts -g... yes
checking for /opt/intel/Compiler/11.0/074/bin/intel64/icc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of /opt/intel/Compiler/11.0/074/bin/intel64/icc... gcc3
checking if unsupported combinations of configure options are allowed... no
checking if Fortran interface enabled... yes
checking whether we are using the GNU Fortran compiler... no
checking whether /opt/intel/Compiler/11.1/064/bin/intel64/ifort accepts -g... yes
checking for Fortran flag to compile .f90 files... none
checking whether we are using the GNU Fortran compiler... (cached) no
checking whether /opt/intel/Compiler/11.1/064/bin/intel64/ifort accepts -g... (cached) yes
checking what /opt/intel/Compiler/11.1/064/bin/intel64/ifort does with modules... module.mod
checking how /opt/intel/Compiler/11.1/064/bin/intel64/ifort finds modules... -I
checking how to get verbose linking output from /opt/intel/Compiler/11.1/064/bin/intel64/ifort... -v
checking for Fortran libraries of /opt/intel/Compiler/11.1/064/bin/intel64/ifort... 
-L/opt/intel/Compiler/11.1/064/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../.. -L/lib64 -L/lib -L/usr/lib64 -L/usr/lib
-lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking if Fortran compiler supports intrinsic SIZEOF... yes
checking if Fortran default REAL is DOUBLE PRECISION... no
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking if c++ interface enabled... no
checking for perl... perl
checking for ar... ar
checking whether make sets $(MAKE)... (cached) yes
checking for tr... /usr/bin/tr
checking if srcdir= and time commands work together... no
checking if shared Fortran libraries are supported... yes
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by /opt/intel/Compiler/11.0/074/bin/intel64/icc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 98304
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for archiver  <at> FILE support...  <at> 
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from /opt/intel/Compiler/11.0/074/bin/intel64/icc
object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... /opt/intel/Compiler/11.0/074/bin/intel64/icc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if /opt/intel/Compiler/11.0/074/bin/intel64/icc supports -fno-rtti -fno-exceptions... yes
checking for /opt/intel/Compiler/11.0/074/bin/intel64/icc option to produce PIC... -fPIC -DPIC
checking if /opt/intel/Compiler/11.0/074/bin/intel64/icc PIC flag -fPIC -DPIC works... yes
checking if /opt/intel/Compiler/11.0/074/bin/intel64/icc static flag -static works... yes
checking if /opt/intel/Compiler/11.0/074/bin/intel64/icc supports -c -o file.o... yes
checking if /opt/intel/Compiler/11.0/074/bin/intel64/icc supports -c -o file.o... (cached) yes
checking whether the /opt/intel/Compiler/11.0/074/bin/intel64/icc linker (/usr/bin/ld -m
elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dlopen... yes
checking whether a program can dlopen itself... yes
checking whether a statically linked program can dlopen itself... no
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for /opt/intel/Compiler/11.1/064/bin/intel64/ifort option to produce PIC... -fPIC
checking if /opt/intel/Compiler/11.1/064/bin/intel64/ifort PIC flag -fPIC works... yes
checking if /opt/intel/Compiler/11.1/064/bin/intel64/ifort static flag -static works... yes
checking if /opt/intel/Compiler/11.1/064/bin/intel64/ifort supports -c -o file.o... yes
checking if /opt/intel/Compiler/11.1/064/bin/intel64/ifort supports -c -o file.o... (cached) yes
checking whether the /opt/intel/Compiler/11.1/064/bin/intel64/ifort linker (/usr/bin/ld -m
elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
fixing $wl in libtool
checking if we should install only statically linked executables... no
checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes
checking make... checking how make searches directories... VPATH=DIR1 DIR2 ...
checking whether make will build with undefined variables... yes
checking for production mode... production
checking for ceil in -lm... yes
checking for ANSI C header files... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking for difftime... yes
checking for gettimeofday... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking for sys/stat.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/types.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking setjmp.h usability... yes
checking setjmp.h presence... yes
checking for setjmp.h... yes
checking features.h usability... yes
checking features.h presence... yes
checking for features.h... yes
checking for stdint.h... (cached) yes
checking io.h usability... no
checking io.h presence... no
checking for io.h... no
checking winsock.h usability... no
checking winsock.h presence... no
checking for winsock.h... no
checking sys/timeb.h usability... yes
checking sys/timeb.h presence... yes
checking for sys/timeb.h... yes
checking if libtool needs -no-undefined flag to build shared libraries... no
checking if configure should try to set up large file support... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking if large (64-bit) files are supported on this system.... yes
checking for lseek64... yes
checking for fseeko64... yes
checking for ftello64... yes
checking for ftruncate64... yes
checking for fseeko... yes
checking for ftello... yes
checking for stat64... yes
checking for fstat64... yes
checking for off_t... yes
checking for size_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking whether byte ordering is bigendian... no
checking size of char... 1
checking size of short... 2
checking size of int... 4
checking size of unsigned... 4
checking size of long... 8
checking size of long long... 8
checking size of __int64... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 16
checking size of int8_t... 1
checking size of uint8_t... 1
checking size of int_least8_t... 1
checking size of uint_least8_t... 1
checking size of int_fast8_t... 1
checking size of uint_fast8_t... 1
checking size of int16_t... 2
checking size of uint16_t... 2
checking size of int_least16_t... 2
checking size of uint_least16_t... 2
checking size of int_fast16_t... 8
checking size of uint_fast16_t... 8
checking size of int32_t... 4
checking size of uint32_t... 4
checking size of int_least32_t... 4
checking size of uint_least32_t... 4
checking size of int_fast32_t... 8
checking size of uint_fast32_t... 8
checking size of int64_t... 8
checking size of uint64_t... 8
checking size of int_least64_t... 8
checking size of uint_least64_t... 8
checking size of int_fast64_t... 8
checking size of uint_fast64_t... 8
checking size of size_t... 8
checking size of ssize_t... 8
checking size of ptrdiff_t... 8
checking size of off_t... 8
checking size of off64_t... 8
checking if dev_t is scalar... yes
checking for dmalloc library... suppressed
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for compress2 in -lz... yes
checking for compress2... yes
checking for szlib... suppressed
checking for pthread... suppressed
checking for thread safe support... no
checking for tm_gmtoff in struct tm... yes
checking for __tm_gmtoff in struct tm... no
checking for global timezone variable... no
checking whether struct tm is in sys/time.h or time.h... time.h
checking for struct tm.tm_zone... yes
checking for struct timezone... yes
checking whether gettimeofday() gives timezone... yes
checking for st_blocks in struct stat... yes
checking for _getvideoconfig... no
checking for gettextinfo... no
checking for GetConsoleScreenBufferInfo... no
checking for _scrsize... no
checking for ioctl... yes
checking for struct videoconfig... no
checking for struct text_info... no
checking for TIOCGWINSZ... yes
checking for TIOCGETD... yes
checking for alarm... yes
checking for BSDgettimeofday... no
checking for fork... yes
checking for frexpf... yes
checking for frexpl... yes
checking for gethostname... yes
checking for getpwuid... yes
checking for getrusage... yes
checking for lstat... yes
checking for rand_r... yes
checking for random... yes
checking for setsysinfo... no
checking for signal... yes
checking for longjmp... yes
checking for setjmp... yes
checking for siglongjmp... yes
checking for sigsetjmp... no
checking for sigprocmask... yes
checking for snprintf... yes
checking for srandom... yes
checking for strdup... yes
checking for symlink... yes
checking for system... yes
checking for tmpfile... yes
checking for vasprintf... yes
checking for waitpid... yes
checking for vsnprintf... yes
checking if vsnprintf returns correct value... yes
checking if lone colon can be used as an argument... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for __attribute__ extension... yes
checking for __func__ extension... yes
checking for __FUNCTION__ extension... yes
checking for C99 designated initialization support... yes
checking how to print long long... %ld and %lu
checking Threads support system scope... yes
checking for gpfs... suppressed
checking for debug flags... none
checking whether function stack tracking is enabled... no
checking whether metadata trace file code is enabled... no
checking for API tracing... no
checking for instrumented library... no
checking whether to clear file buffers... yes
checking whether a memory checking tool will be used... no
checking for parallel support files... skipped
checking for I/O filters... all (shuffle,fletcher32,nbit,scaleoffset)
checking for Default Virtual File Driver definition... yes
checking for Direct Virtual File Driver support... no
checking whether exception handling functions is checked during data conversions... yes
checking whether data accuracy is guaranteed during data conversions... yes
checking if converting denormalized floating-point values is possible... yes
checking if converting floating-point values to long long is not working... false
checking if the machine has window style path name... no
checking if converting from long double to integers is accurate... yes
checking if converting from long double to integers works... yes
checking if accurately converting from integers to long double... yes
checking if accurately converting unsigned long to float values... yes
checking if accurately converting unsigned long long to floating-point values... yes
checking if accurately roundup converting floating-point to unsigned long long values... yes
checking if right maximum converting floating-point to unsigned long long values... no
checking if correctly converting long double to unsigned int values... yes
checking if compiling unsigned long long to floating-point typecasts work... yes
checking if compiling long long to floating-point typecasts work... yes
checking if converting unsigned long long to long double with precision... yes
checking if overflows normally converting floating-point to integer values... yes
checking if using special algorithm to convert long double to (unsigned) long values... no
checking if using special algorithm to convert (unsigned) long to long double values... no
checking if correctly converting long double to (unsigned) long long values... yes
checking if correctly converting (unsigned) long long to long double values... yes
checking if bad code for log2 routine is generated... no
checking if high level library is enabled... yes
checking additional programs should be built... no
checking if deprecated public symbols are available... yes
checking which version of public symbols to use by default... v18
checking Whether to perform strict file format checks... no
checking Whether to have library information embedded in the executables... yes
checking Whether to enable the h5dump packed bits feature... yes
checking if alignment restrictions are strictly enforced... no
configure: creating ./config.status
configure: creating ./config.lt
config.lt: creating libtool
config.status: creating src/libhdf5.settings
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating test/testcheck_version.sh
config.status: creating test/testerror.sh
config.status: creating test/H5srcdir_str.h
config.status: creating test/testlibinfo.sh
config.status: creating test/testlinks_env.sh
config.status: creating testpar/Makefile
config.status: creating testpar/testph5.sh
config.status: creating perform/Makefile
config.status: creating tools/Makefile
config.status: creating tools/h5dump/Makefile
config.status: creating tools/h5dump/testh5dump.sh
config.status: creating tools/h5dump/testh5dumpxml.sh
config.status: creating tools/h5ls/testh5ls.sh
config.status: creating tools/h5import/Makefile
config.status: creating tools/h5diff/Makefile
config.status: creating tools/h5jam/Makefile
config.status: creating tools/h5jam/testh5jam.sh
config.status: creating tools/h5repack/Makefile
config.status: creating tools/h5repack/h5repack.sh
config.status: creating tools/h5ls/Makefile
config.status: creating tools/h5copy/Makefile
config.status: creating tools/lib/Makefile
config.status: creating tools/misc/Makefile
config.status: creating tools/misc/h5cc
config.status: creating tools/misc/testh5repart.sh
config.status: creating tools/h5stat/testh5stat.sh
config.status: creating tools/h5stat/Makefile
config.status: creating examples/Makefile
config.status: creating examples/run-c-ex.sh
config.status: creating examples/testh5cc.sh
config.status: creating c++/Makefile
config.status: creating c++/src/Makefile
config.status: creating c++/src/h5c++
config.status: creating c++/test/Makefile
config.status: creating c++/test/H5srcdir_str.h
config.status: creating c++/examples/Makefile
config.status: creating c++/examples/run-c++-ex.sh
config.status: creating c++/examples/testh5c++.sh
config.status: creating fortran/Makefile
config.status: creating fortran/src/h5fc
config.status: creating fortran/src/Makefile
config.status: creating fortran/test/Makefile
config.status: creating fortran/testpar/Makefile
config.status: creating fortran/examples/Makefile
config.status: creating fortran/examples/run-fortran-ex.sh
config.status: creating fortran/examples/testh5fc.sh
config.status: creating hl/Makefile
config.status: creating hl/src/Makefile
config.status: creating hl/test/Makefile
config.status: creating hl/test/H5srcdir_str.h
config.status: creating hl/tools/Makefile
config.status: creating hl/tools/gif2h5/Makefile
config.status: creating hl/examples/Makefile
config.status: creating hl/examples/run-hlc-ex.sh
config.status: creating hl/c++/Makefile
config.status: creating hl/c++/src/Makefile
config.status: creating hl/c++/test/Makefile
config.status: creating hl/c++/examples/Makefile
config.status: creating hl/c++/examples/run-hlc++-ex.sh
config.status: creating hl/fortran/Makefile
config.status: creating hl/fortran/src/Makefile
config.status: creating hl/fortran/test/Makefile
config.status: creating hl/fortran/examples/Makefile
config.status: creating hl/fortran/examples/run-hlfortran-ex.sh
config.status: creating src/H5config.h
config.status: executing default-1 commands
creating src/H5pubconf.h
Post process src/libhdf5.settings
config.status: executing depfiles commands
config.status: executing libtool commands
	    SUMMARY OF THE HDF5 CONFIGURATION
	    =================================

General Information:
-------------------
		   HDF5 Version: 1.8.7
		  Configured on: Thu Jun 23 16:37:49 BST 2011
		  Configured by: mccssmb2@...
		 Configure mode: production
		    Host system: x86_64-unknown-linux-gnu
	      Uname information: Linux redqueen.rcs.manchester.ac.uk 2.6.18-238.1.1.el5 #1 SMP Tue Jan 18
18:49:37 EST 2011 x86_64 x86_64 x86_64 GNU/Linux
		       Byte sex: little-endian
		      Libraries: 
	     Installation point: /software/hdf/5/1.8.7/hdf5-1.8.7/hdf5

Compiling Options:
------------------
               Compilation Mode: production
                     C Compiler: /opt/intel/Compiler/11.0/074/bin/intel64/icc ( Intel(R) C Intel(R) 64 Compiler Version
11.0 Build 20081105 Package ID: l_cproc_p_11.0.074)
                         CFLAGS: 
                      H5_CFLAGS: -std=c99  -O3
                      AM_CFLAGS: 
                       CPPFLAGS: 
                    H5_CPPFLAGS: -D_POSIX_SOURCE   -DNDEBUG -UH5_DEBUG_API
                    AM_CPPFLAGS: -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE 
               Shared C Library: yes
               Static C Library: yes
  Statically Linked Executables: no
                        LDFLAGS: 
                     H5_LDFLAGS: 
                     AM_LDFLAGS: 
 	 	Extra libraries:  -lz -lm 
 		       Archiver: ar
 		 	 Ranlib: ranlib
 	      Debugged Packages: 
		    API Tracing: no

Languages:
----------
                        Fortran: yes
               Fortran Compiler: /opt/intel/Compiler/11.1/064/bin/intel64/ifort ( Intel(R) Fortran Intel(R) 64
Compiler Version 11.1 Build 20091130 Package ID: l_cprof_p_11.1.064)
                  Fortran Flags: 
               H5 Fortran Flags:  -O3
               AM Fortran Flags:  
         Shared Fortran Library: yes
         Static Fortran Library: yes

                            C++: no

Features:
---------
                  Parallel HDF5: no
             High Level library: yes
                   Threadsafety: no
            Default API Mapping: v18
 With Deprecated Public Symbols: yes
         I/O filters (external): deflate(zlib)
         I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
                            MPE: no
                     Direct VFD: no
                        dmalloc: no
Clear file buffers before write: yes
           Using memory checker: no
         Function Stack Tracing: no
                           GPFS: no
      Strict File Format Checks: no
   Optimization Instrumentation: no
       Large File Support (LFS): yes
             H5dump Packed Bits: yes

Gmane