1 Apr 2010 17:44
Re: Representing multiple organisms from the same species in CHADO - best way?
Scott Cain <scott <at> scottcain.net>
2010-04-01 15:44:26 GMT
2010-04-01 15:44:26 GMT
Hi Leighton, I just wanted to let you know that I fixed this organism behavior in svn (the gbrowse-adaptors/Chado directory). I've got a few more fixes to address, and then I'll make a 0.24 release. If you wanted to try it from svn, see http://gmod.org/wiki/SVN for hints on getting a checkout. Scott On Mon, Mar 22, 2010 at 4:44 AM, Leighton Pritchard <lpritc <at> scri.ac.uk> wrote: > Hi, > > On 19/03/2010 Friday, March 19, 16:28, "Scott Cain" <scott <at> scottcain.net> > wrote: > >> Then don't do that!> > I can't help myself - I have a compulsion to break things... ;) > > Seriously though, I only noticed it because I initially used the organism > abbreviation, rather than common name. The problem occurs with typos, too. > >> I agree it's a bug; I suppose what it ought to do when given an >> invalid organism is throw a 500 error and go no further. Do you >> agree? > > I agree that it should halt immediately. A 500 response covers > configuration errors, doesn't it? If that's the case, it looks likt the > appropriate error, to me. > > Cheers, > > L. > > -- > Dr Leighton Pritchard MRSC > D131, Plant Pathology Programme, SCRI > Errol Road, Invergowrie, Perth and Kinross, Scotland, DD2 5DA > e:lpritc <at> scri.ac.uk w:http://www.scri.ac.uk/staff/leightonpritchard > gpg/pgp: 0xFEFC205C tel:+44(0)1382 562731 x2405 > > > ______________________________________________________ > SCRI, Invergowrie, Dundee, DD2 5DA. > The Scottish Crop Research Institute is a charitable company limited by guarantee. > Registered in Scotland No: SC 29367. > Recognised by the Inland Revenue as a Scottish Charity No: SC 006662. > > > DISCLAIMER: > > This email is from the Scottish Crop Research Institute, but the views expressed by the sender are not necessarily the views of SCRI and its subsidiaries. This email and any files transmitted with it are confidential to the intended recipient at the e-mail address to which it has been addressed. It may not be disclosed or used by any other than that > addressee. > If you are not the intended recipient you are requested to preserve this confidentiality and you must not use, disclose, copy, print or rely on this e-mail in any way. Please notify postmaster <at> scri.ac.uk quoting the name of the sender and delete the email from your system. > > Although SCRI has taken reasonable precautions to ensure no viruses are present in this email, neither the Institute nor the sender accepts any responsibility for any viruses, and it is your responsibility to scan the email and the attachments (if any). > ______________________________________________________ > -- -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev
>
> I can't help myself - I have a compulsion to break things... ;)
>
> Seriously though, I only noticed it because I initially used the organism
> abbreviation, rather than common name. The problem occurs with typos, too.
>
>> I agree it's a bug; I suppose what it ought to do when given an
>> invalid organism is throw a 500 error and go no further. Do you
>> agree?
>
> I agree that it should halt immediately. A 500 response covers
> configuration errors, doesn't it? If that's the case, it looks likt the
> appropriate error, to me.
>
> Cheers,
>
> L.
>
> --
> Dr Leighton Pritchard MRSC
> D131, Plant Pathology Programme, SCRI
> Errol Road, Invergowrie, Perth and Kinross, Scotland, DD2 5DA
> e:lpritc <at> scri.ac.uk w:
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