15 May 17:55
RCurl compilation error - fedora 7
From: martin sikora <martin.sikora@...>
Subject: RCurl compilation error - fedora 7
Newsgroups: gmane.science.biology.informatics.conductor
Date: 2008-05-15 15:56:06 GMT
Subject: RCurl compilation error - fedora 7
Newsgroups: gmane.science.biology.informatics.conductor
Date: 2008-05-15 15:56:06 GMT
dear list members, i'm having a problem installing the biomaRt package on my linux machine, due to the fact of a compilation error with RCurl. i am using R 2.6.2 on fedora 7, and this is the output i get: gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/include/R -DHAVE_LIBIDN_FIELD=1 -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c base64.c -o base64.o In file included from base64.c:1: Rcurl.h:52: error: expected specifier-qualifier-list before ?cetype_t? base64.c: In function ?R_base64_decode?: base64.c:25: warning: pointer targets in assignment differ in signedness base64.c:39: warning: pointer targets in passing argument 1 of ?Rf_mkString? differ in signedness base64.c: In function ?R_base64_encode?: base64.c:60: warning: pointer targets in assignment differ in signedness make: *** [base64.o] Error 1 as far as i know i have all the necessary libraries installed: $ yum list installed | grep libxml libxml2.i386 2.6.31-1.fc7 installed libxml2-devel.i386 2.6.31-1.fc7 installed libxml2-python.i386 2.6.31-1.fc7 installed perl-libxml-perl.noarch 0.08-1.2.1 installed $ yum list installed | grep curl curl.i386 7.16.4-1.fc7 installed curl-devel.i386 7.16.4-1.fc7 installed python-pycurl.i386 7.16.0-0.1.20061207.fc installed as i am not an expert in linux stuff, i was wondering if there could be any other missing libraries? any other ideas? cheers martin [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor@... https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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