martin sikora | 15 May 17:55
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RCurl compilation error - fedora 7

dear list members,

i'm having a problem installing the biomaRt package on my linux machine, 
due to the fact of a compilation error with RCurl. i am using R 2.6.2 on 
fedora 7, and this is the output i get:

gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/include/R  
-DHAVE_LIBIDN_FIELD=1 -I/usr/local/include    -fpic  -O2 -g -pipe -Wall 
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector 
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic 
-fasynchronous-unwind-tables -c base64.c -o base64.o
In file included from base64.c:1:
Rcurl.h:52: error: expected specifier-qualifier-list before ?cetype_t?
base64.c: In function ?R_base64_decode?:
base64.c:25: warning: pointer targets in assignment differ in signedness
base64.c:39: warning: pointer targets in passing argument 1 of 
?Rf_mkString? differ in signedness
base64.c: In function ?R_base64_encode?:
base64.c:60: warning: pointer targets in assignment differ in signedness
make: *** [base64.o] Error 1

as far as i know i have all the necessary libraries installed:

$ yum list installed | grep libxml
libxml2.i386                             2.6.31-1.fc7           
installed      
libxml2-devel.i386                       2.6.31-1.fc7           
installed      
libxml2-python.i386                      2.6.31-1.fc7           
installed      
perl-libxml-perl.noarch                  0.08-1.2.1             
installed      

$ yum list installed | grep curl
curl.i386                                7.16.4-1.fc7           
installed      
curl-devel.i386                          7.16.4-1.fc7           
installed      
python-pycurl.i386                       7.16.0-0.1.20061207.fc installed

as i am not an expert in linux stuff, i was wondering if there could be 
any other missing libraries? any other ideas?

cheers
martin

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