16 May 06:23
Re: question on affyQCReport vignette
From: Keith Satterley <keith@...>
Subject: Re: question on affyQCReport vignette
Newsgroups: gmane.science.biology.informatics.conductor
Date: 2008-05-16 04:23:12 GMT
Subject: Re: question on affyQCReport vignette
Newsgroups: gmane.science.biology.informatics.conductor
Date: 2008-05-16 04:23:12 GMT
Hi Mark,
are you aware of the citation("package_name") command. See limma package for an
example. I notice that the affyQCReport citation is auto generated.
Perhaps more package authors should be encouraged to take control of what
citation() reports.
cheers,
Keith
========================
Keith Satterley
Bioinformatics Division
The Walter and Eliza Hall Institute of Medical Research
Parkville, Melbourne,
Victoria, Australia
=======================
Mark Kimpel wrote:
> I am a satistified user of affyQCReport and want to make sure that I include
> the appropriate citations in a paper I am submitting. As this package is
> sort of a wrapper for some other packages and the vignette does not include
> any references beyond that of Gautier, et al, which describes the affy
> package, could someone be kind enough to supply me with the appropriate
> citations?
>
> In general, it is sort of a pet peeve of mine that developers rightly want
> their work cited, but too often I feel that the citation information on the
> help(package == "foo") page is imcomplete. Would it be presumtuous to ask
> for developers to include a handy list of citations for their packages,
> package dependencies, etc. as part of the general help page for their
> package? I don't know what the official R/BioC policy is on this, but it
> would be extremely helpful both to users and those whose original ideas are
> incorporated into R/BioC.
>
> And, if I"ve missed something obvious, point me in the right direction,
> spank me with a wet noodle and accept my apologies.
>
> Thanks,
> Mark
>
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