Robert Castelo | 2 Nov 09:33 2009

Re: MatLab SimBiology

dear Maura,

i'm not expert on this and i'm not familiar with the SimBiology toolbox
for MatLab, but i had once a nice short incursion into this subject with
the book:

S.P. Ellner and J. Guckenheimer
Dynamic Models in Biology
Princeton University Press (2006)

http://press.princeton.edu/titles/8124.html

from this web page you'll see that it has supplementary materials in the
following link:

http://www.cam.cornell.edu/~dmb/DMBsupplements.html

which consist of both matlab and ** R ** scripts.

cheers,

robert.

On Fri, 2009-10-30 at 18:12 +0100, mauede@... wrote:
> Is there any R package that implements the same capability of MatLab toolbox called SimBiology ?
> We are expecially interested in protein-protein interactions and network analysis.
> As far as I know SimBiology implements a system of ODEs reflecting the kinetic chemical reactions.
> We would be more interested in stochastic simulations.
> Thank you in advance.
> 
> Maura
> 
> 
> tutti i telefonini TIM!
> 
> 
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