25 Jul 2012 19:02
Exporting in XPS
Dear all, before applying any filter to Exon data, I would like to export them to a text file as transcripts, i.e, I have RMAed my data using the following command following the code coming along with the package: rma.tc.core <- rma(data.exon, "MixExonRMAcore", filedir=outdir, tmpdir="", background="antigenomic", normalize=TRUE, option="transcript", exonlevel="affx+core") Is there a way to get an output like the following (also non log2 trasformed data will suffice): GeneID HCC1187 SUM44PE MCF7 MDAMB436 LY2 BT549 A1BG 6.31 6.35 6.66 6.47 6.81 6.66 A2M 4.37 4.58 4.57 4.44 4.84 4.47 A2ML1 5.50 5.85 5.54 5.53 5.60 5.31 A3GALT2 6.13 6.10 6.06 6.23 5.99 5.76 Thanks in advance. Giovanni ----------------------------------------------------------- Giovanni Lavorgna DIBIT-HSR Via Olgettina, 58 20132 Milan Italy Tel: +39-02-2643-4776 Fax: +39-02-2643-4767 Email: giovanni.lavorgna at hsr.it -------------------------------------------------------------------------- LA TUA CURA E' SCRITTA NEL TUO DNA. AL SAN RAFFAELE LA STIAMO REALIZZANDO. AIUTA LA RICERCA, DAI IL TUO 5XMILLE - CF: 03 06 80 153 info:www.5xmille@... - www.5xmille.org Disclaimer added by CodeTwo Exchange Rules 2007 http://www.codetwo.com _______________________________________________ Bioconductor mailing list Bioconductor@... https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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