Kasper Daniel Hansen | 11 Oct 02:46 2012
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Re: Error in .Call("R_shortRowNames", x, type, PACKAGE = "base") : "R_shortRowNames" not available for .Call() for package "base"

An example would be great.

But I am guessing this is related to R-core making it much harder to
access the C core.  Essentially, R_shortRowNames is now unexported
(guessing).

Kasper

On Wed, Oct 10, 2012 at 3:04 PM, Tim Triche, Jr. <tim.triche@...> wrote:
> D'oh.  Not sure what's going on here.  Google leads me to this:
>
> https://code.google.com/p/renjin/
>
> Which is very cool, but does not solve my present problem. I can't seem to
> pull a matrix out of an eSet-derived object, which is making life difficult
> at the moment.
>
> R> sessionInfo()
> R Under development (unstable) (2012-10-08 r60907)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
> LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
> LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=C                 LC_NAME=C                  LC_ADDRESS=C
>           LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8
> LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices datasets  utils     methods   base
>
> other attached packages:
>  [1] MASS_7.3-22                        methylumi_2.5.0
>  ggplot2_0.9.2.1                    reshape2_1.2.1
>  [5] scales_0.2.2                       impute_1.33.0
>  regulatoR_0.9.25                   FDb.InfiniumMethylation.hg19_1.0.4
>  [9] Biostrings_2.27.2                  GenomicFeatures_1.11.1
> AnnotationDbi_1.21.0               rtracklayer_1.19.0
> [13] GenomicRanges_1.11.0               IRanges_1.17.0
> Matrix_1.0-9                       lattice_0.20-10
> [17] Biobase_2.19.0                     BiocGenerics_0.5.0
> BiocInstaller_1.9.4                dataframe_2.5
> [21] devtools_0.8                       gtools_2.7.0
>
> loaded via a namespace (and not attached):
>  [1] annotate_1.37.0    biomaRt_2.15.0     bitops_1.0-4.1
> BSgenome_1.27.0    colorspace_1.1-1   DBI_0.2-5          dichromat_1.2-4
>  digest_0.5.2       edgeR_3.1.0
> [10] evaluate_0.4.2     grid_2.16.0        gtable_0.1.1       httr_0.1.1
>       labeling_0.1       limma_3.15.2       memoise_0.1        munsell_0.4
>        parallel_2.16.0
> [19] plyr_1.7.1         proto_0.3-9.2      RColorBrewer_1.0-5
> RCurl_1.95-0.1.2   Repitools_1.5.0    Rsamtools_1.11.1   RSQLite_0.11.2
> stats4_2.16.0      stringr_0.6.1
> [28] tools_2.16.0       whisker_0.1        XML_3.95-0.1       xtable_1.7-0
>       zlibbioc_1.5.0
>
>
> --
> *A model is a lie that helps you see the truth.*
> *
> *
> Howard Skipper<http://cancerres.aacrjournals.org/content/31/9/1173.full.pdf>
>
>         [[alternative HTML version deleted]]
>
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