Dan Tenenbaum | 15 Nov 18:59 2012

Re: DESeq not available

On Thu, Nov 15, 2012 at 9:54 AM, Emma [guest] <guest@...> wrote:
>
> I've been trying to install DESeq in R for the past 2 days, and I keep on getting the error that it is not
available.  I have tried to install both through the package installer and by using the code on your
website.  Is the website down or have I done something wrong?
> Thank you
>
>  -- output of sessionInfo():
>
>> source('http://bioconductor.org/biocLite.R')
>> biocLite('DESeq')
> Using R version 2.9.2, biocinstall version 2.4.13.

If you look at the package homepage for DESeq:
http://bioconductor.org/packages/release/bioc/html/DESeq.html

You see that it has only been around since
Bioconductor 2.6 (R-2.11). So that's why you can't install it for R 2.9.2.
I recommend that you update to the most recently released R, which is R-2.15.2.

Dan

> Installing Bioconductor version 2.4 packages:
> [1] "DESeq"
> Please wait...
>
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
>   package ‘DESeq’ is not available
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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