Hooiveld, Guido | 21 Nov 09:09 2012
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Re: annotation by drosophila 2db 2.7.1

Hi,
See bottom of output (for current version):

> library(drosophila2.db)
> drosophila2()
Quality control information for drosophila2:

This package has the following mappings:

drosophila2ACCNUM has 18777 mapped keys (of 18952 keys)
drosophila2ALIAS2PROBE has 63017 mapped keys (of 86429 keys)
drosophila2CHR has 13646 mapped keys (of 18952 keys)
drosophila2CHRLENGTHS has 15 mapped keys (of 15 keys)
drosophila2CHRLOC has 13646 mapped keys (of 18952 keys)
drosophila2CHRLOCEND has 13646 mapped keys (of 18952 keys)
drosophila2ENTREZID has 13646 mapped keys (of 18952 keys)
drosophila2ENZYME has 1469 mapped keys (of 18952 keys)
drosophila2ENZYME2PROBE has 608 mapped keys (of 628 keys)
drosophila2FLYBASE has 13646 mapped keys (of 18952 keys)
drosophila2FLYBASE2PROBE has 12296 mapped keys (of 22928 keys)
drosophila2FLYBASECG has 13646 mapped keys (of 18952 keys)
drosophila2FLYBASECG2PROBE has 12296 mapped keys (of 15399 keys)
drosophila2GENENAME has 13646 mapped keys (of 18952 keys)
drosophila2GO has 11120 mapped keys (of 18952 keys)
drosophila2GO2ALLPROBES has 8235 mapped keys (of 8454 keys)
drosophila2GO2PROBE has 5580 mapped keys (of 5788 keys)
drosophila2MAP has 13578 mapped keys (of 18952 keys)
drosophila2PATH has 2430 mapped keys (of 18952 keys)
drosophila2PATH2PROBE has 127 mapped keys (of 127 keys)
drosophila2PMID has 13646 mapped keys (of 18952 keys)
drosophila2PMID2PROBE has 29774 mapped keys (of 30639 keys)
drosophila2REFSEQ has 13646 mapped keys (of 18952 keys)
drosophila2SYMBOL has 13646 mapped keys (of 18952 keys)
drosophila2UNIGENE has 12372 mapped keys (of 18952 keys)
drosophila2UNIPROT has 13631 mapped keys (of 18952 keys)

Additional Information about this package:

DB schema: FLYCHIP_DB
DB schema version: 2.1
Organism: Drosophila melanogaster
Date for NCBI data: 2012-Sep4
Date for GO data: 20120901
Date for KEGG data: 2011-Mar15
Date for Golden Path data: 2009-Jul5
Date for Flybase data: 2012-Apr
Date for Ensembl data: 2012-Jul31
>

HTH,
Guido

-----Original Message-----
From: bioconductor-bounces@...
[mailto:bioconductor-bounces@...] On Behalf Of Ayse Yarali
Sent: Wednesday, November 21, 2012 08:02
To: bioconductor@...
Subject: [BioC] annotation by drosophila 2db 2.7.1

Hi!
I have been using the drosophila 2db 2.7.1 for annotating my array data. I know it is outdated, but I want to
know how much outdated it is. Could you tell me the date stamp of the source?
Thanks a lot!
Ayse

Dr. Ayse Yarali
Max Planck Institute of Neurobiology,
Martinsried, Germany

new phone number!!!
+49 (0) 89 8578 3452

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