Re: justRMA?

Thank you again, James.

This confusion is because of myself being new to R. Hope you understand
this.

Regards,

Bhargavi

On Tue, Dec 11, 2012 at 4:25 PM, James W. MacDonald <jmacdon@...> wrote:

> Hi Bhargavi,
>
>
> On 12/11/2012 4:14 PM, Bhargavi Duvvuri wrote:
>
>> Hello James,
>>
>> The one I am using:
>>
>> [1]*primeviewhsrefseqcdf_1.36.**0* AnnotationDbi_1.20.3
>>
>> [3] Biobase_2.18.0              BiocGenerics_0.4.0
>>
>>
>> Your primeview package
>> *primeviewhsrefseqcdf_16.0.0*
>> *
>> *
>> My windows version:
>> *PrimeViewHsREFSEQcdf_1.36.0 *
>> *
>> *
>> As you ca see windows and Linux versions I am using are the same, except
>> for uppercase and lowercase. On windows I get 34901 and on Linux i get
>> 26308*. *If it was for the primeview package version, why would this work
>> on windows?
>>
>> Please advise.
>>
>
> I have been trying to advise, but you seem intent on not being advised. So
> this is my last shot. Expect no more responses from me on this subject.
> TYPE EXACTLY WHAT I HAVE WRITTEN BELOW AT AN R PROMPT ON YOUR LINUX BOX.
>
> library(BiocInstaller)
> biocLite("**primeviewhsrefseqcdf")
>
>
>
>> Thank you
>> *
>> *
>> *Bhargavi*
>>
>>
>>
>> On Tue, Dec 11, 2012 at 3:58 PM, James W. MacDonald <jmacdon@...<mailto:
>> jmacdon@...>> wrote:
>>
>>
>>
>>     On 12/11/2012 3:53 PM, Bhargavi Duvvuri wrote:
>>
>>         Hello James,
>>
>>         I am very new to R.
>>
>>         I see minor change in the R version.
>>
>>         My version of R sessionInfo()
>>
>>         *R version 2.15.0 (2012-03-30)*
>>
>>         Platform: x86_64-unknown-linux-gnu (64-bit)
>>         loaded via a namespace (and not attached):
>>         [1] DBI_0.2-5       IRanges_1.16.4  parallel_2.15.0 RSQLite_0.11.2
>>         [5] stats4_2.15.0   tools_2.15.0
>>
>>         Your version of sessionInfo():
>>
>>         *R version 2.15.1 (2012-06-22)*
>>
>>         Platform: x86_64-unknown-linux-gnu (64-bit)
>>         other attached packages:
>>
>>         loaded via a namespace (and not attached):
>>         [1] DBI_0.2-5       IRanges_1.16.4  parallel_2.15.1 RSQLite_0.11.2
>>         [5] stats4_2.15.1   tools_2.15.1
>>
>>         Do you think this minor difference would make effect?
>>
>>
>>     No. But if you re-read what I have said below, you will note I am
>>     not talking about the version of R you are using. Instead, I am
>>     talking about the version of primeviewhsrefseqcdf you are using.
>>
>>     The package you are using is different from the one I am using,
>>     and since you didn't load it before running sessionInfo() I have
>>     no idea what you are using. If the version is the same as mine,
>>     then I would assume there was a problem somewhere along the line
>>     and you need to re-install. Well, actually I think you need to
>>     re-install regardless.
>>
>>     So try that and see if the updated version of that package looks OK.
>>
>>     Best,
>>
>>     Jim
>>
>>
>>         Thank you
>>
>>         Bhargavi
>>
>>
>>
>>         On Tue, Dec 11, 2012 at 3:18 PM, James W. MacDonald
>>         <jmacdon@... <mailto:jmacdon@...> <mailto:jmacdon@...
>>
>>         <mailto:jmacdon@...>>> wrote:
>>
>>             R version 2.15.1 (2012-06-22)
>>             Platform: x86_64-unknown-linux-gnu (64-bit)
>>
>>
>>
>>
>>         --         Bhargavi Duvvuri M.Sc, Ph.D
>>         TAS/CAN Postdoctoral Research Fellow
>>         The Hospital for Sick Children Research Institute
>>         Division of Cell Biology
>>         MARS Centre - Toronto Medical Discovery Tower
>>         101 College street, Rm 12-401 Bay C
>>         Toronto, ON, Canada M5G 1L7
>>         Phone: 416-813-7780 <tel:416-813-7780>
>>         Fax: 416-813-8883 <tel:416-813-8883>
>>         email: bhargavi.duvvuri@...
>>         <mailto:bhargavi.duvvuri <at> **sickkids.ca<bhargavi.duvvuri@...>
>> >
>>         <mailto:bhargavi.duvvuri <at> **sickkids.ca<bhargavi.duvvuri@...>
>>
>>         <mailto:bhargavi.duvvuri <at> **sickkids.ca<bhargavi.duvvuri@...>
>> >>
>>
>>
>>     --     James W. MacDonald, M.S.
>>     Biostatistician
>>     University of Washington
>>     Environmental and Occupational Health Sciences
>>     4225 Roosevelt Way NE, # 100
>>     Seattle WA 98105-6099
>>
>>
>>
>>
>> --
>> Bhargavi Duvvuri M.Sc, Ph.D
>> TAS/CAN Postdoctoral Research Fellow
>> The Hospital for Sick Children Research Institute
>> Division of Cell Biology
>> MARS Centre - Toronto Medical Discovery Tower
>> 101 College street, Rm 12-401 Bay C
>> Toronto, ON, Canada M5G 1L7
>> Phone: 416-813-7780
>> Fax: 416-813-8883
>> email: bhargavi.duvvuri@... <mailto:bhargavi.duvvuri <at> **
>> sickkids.ca <bhargavi.duvvuri@...>>
>>
>>
> --
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
>
>

-- 
Bhargavi Duvvuri M.Sc,
Ph.D
TAS/CAN Postdoctoral Research
Fellow
The Hospital for Sick Children Research Institute
Division of Cell Biology
MARS Centre - Toronto Medical Discovery Tower
101 College street, Rm 12-401 Bay C
Toronto, ON, Canada M5G 1L7
Phone: 416-813-7780
Fax: 416-813-8883
email: bhargavi.duvvuri@...

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