Re: GLM in DEseq

>   How can I retrieve the coefficients corresponding to the contribution of each factor (ie effect due to
genotype, due to treatment and the interaction between genotype and treatment) ?

Have a look into the data frame returned by fitNbinomGLMs. They contain 
all the estimated coefficients, plus two further columns, one with the 
deviances and a booleant to inidicate convergence. (See also 
"?fitNbinomGLMs")

   Simon

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