Hervé Pagès | 18 Jan 21:09 2013

Re: BSgenome forging - Node stack overflow

Hi Sara,

I'm not sure what the problem is but I would suggest you try renaming
your package first. I think having an _ (underscore) in the name is not
supported and is likely to cause problems.

Cheers,
H.

On 01/16/2013 07:26 AM, Sara Castelletti wrote:
> Hi everyone,
>
> I have been trying to create a BSgenome data package for maize (as it is
> not available in the BSgenome package).
> I have prepared the seed file and downloaded the fasta sequences and then I
> proceeded to forge the genome.
>
> After typing
>
> R CMD check "path/to/my/tarball"
>
> the installation failed and the error file goes like this (sorry, it's in
> French, but I think the translation of the error message is "node stack
> overflow")
>
> * installing *source* package 'BSgenome_zm'
> ** R
> ** inst
> ** preparing package for lazy loading
> Error in match.fun(FUN) : pile de noeuds dborde vers le haut
> ERROR: lazy loading failed for package 'BSgenome_zm'
> * removing
>
> I'd appreciate some help to understand what's wrong.
> Thanks in advance.
>
> 	[[alternative HTML version deleted]]
>
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-- 
Hervé Pagès

Program in Computational Biology
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