Lavinia Gordon | 21 Feb 01:25 2013

Re: Pre-processing and probe removal in lumi

Hi Matt,

Not sure about lumi, only use it for HM27 data (for which it is great), not sure how well it works with HM450.
Take a look at the package minfi and also the annotation packages *450*, e.g.
IlluminaHumanMethylation450k.db, Tim Triche Jr. has put some nice well-documented code in these
vignettes which may prove helpful.


Lavinia Gordon
Senior Research Officer
Quantitative Sciences Core, Bioinformatics

Murdoch Childrens Research Institute
The Royal Children's Hospital
Flemington Road Parkville Victoria 3052 Australia 
T 03 8341 6221

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