Steve Lianoglou | 7 Apr 09:43 2013
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Re: snp coordinates

Hi,

On Sat, Apr 6, 2013 at 8:05 AM, Hermann Norpois <hnorpois@...> wrote:

> Hello,
>
> I have a list of 300000 snps (human) and I want to know there genomic
> coordinates. Is there a Bioconductor tool (library) that might help?
>

How about the SNPlocs.* packages here:
http://bioconductor.org/packages/release/BiocViews.html#___AnnotationData

For instance:
http://bioconductor.org/packages/2.12/data/annotation/html/SNPlocs.Hsapiens.dbSNP.20120608.html

Perhaps?

-steve

--

-- 
Steve Lianoglou
Defender of The Thesis
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact

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