chittabrata mal | 15 Jul 13:37 2013

About Quality Control using affyPLM package


Dear List,

During RLE and NUSE plot analysis I obtained numerical summaries based on these plots, like 
        
            20A                
  20B            10A           
         10Bmedian 0.002359773 -0.007542337  
 0.003051789     0.001902185IQR       0.092560253  
0.089580148    0.076335304     0.093406833
What will be the criteria to remove an array for further downstream analysis by inspecting these values?
More specifically, what cut-off criteria I should set to eliminate a faulty array? 

With regards.

	[[alternative HTML version deleted]]

_______________________________________________
Bioconductor mailing list
Bioconductor@...
https://stat.ethz.ch/mailman/listinfo/bioconductor
Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor


Gmane