chittabrata mal | 15 Jul 14:26 2013

About Quality Control using affyPLM package

Dear List,

During RLE and NUSE plot analysis I obtained numerical summaries based on these plots, like

	
	
	
	
	
	

	
	
		

		20A
		20B
		10A
		20B
	
	
		median
		0.002359773
		-0.007542337
		0.003051789
		0.001902185
	
	
		IQR
		0.092560253
		0.089580148
		0.076335304
		0.093406833

	

What will be the criteria to remove an array for further downstream 
analysis by inspecting these values? More specifically, what cut-off 
criteria I should set to eliminate a faulty array? 

With regards.
	[[alternative HTML version deleted]]

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