Krakno [guest] | 30 Sep 11:41 2013

org.Hs.eg.db


Dear all,

I have a problem with the "org.Hs.eg.db" package and would like to ask for some advice on how to get it to work.
Currently, the problem I am facing is that R does not seem to recognize the package, see below for the
context, error message and the sessionInfo().

I have been able to make "org.Mm.eg.db" and "org.Sc.sgd.db" work, but "org.Hs.eg.db" is not recognized.

I would be grateful for any help.

Thanks in advance.
/Krakno

 -- output of sessionInfo(): 

> source("http://bioconductor.org/biocLite.R")
> biocLite("org.Hs.eg.db")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.12 (BiocInstaller 1.10.3), R version 3.0.1.
Installing package(s) 'org.Hs.eg.db'
trying URL 'http://bioconductor.org/packages/2.12/data/annotation/bin/windows/contrib/3.0/org.Hs.eg.db_2.9.0.zip'
Content type 'application/zip' length 53311411 bytes (50.8 Mb)
opened URL
downloaded 50.8 Mb

Warning: cannot remove prior installation of package ‘org.Hs.eg.db’

The downloaded binary packages are in
        C:\Users\<...>\AppData\Local\Temp\RtmpE3cnj9\downloaded_packages
> library(org.Hs.eg.db)
Error in library(org.Hs.eg.db) : 
  there is no package called ‘org.Hs.eg.db’

> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Swedish_Sweden.1252  LC_CTYPE=Swedish_Sweden.1252   
[3] LC_MONETARY=Swedish_Sweden.1252 LC_NUMERIC=C                   
[5] LC_TIME=Swedish_Sweden.1252    

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] BSgenome.Hsapiens.UCSC.hg19_1.3.19 BSgenome_1.28.0                   
 [3] Biostrings_2.28.0                  GenomicRanges_1.12.5              
 [5] IRanges_1.18.4                     org.Mm.eg.db_2.9.0                
 [7] RSQLite_0.11.4                     DBI_0.2-7                         
 [9] AnnotationDbi_1.22.6               Biobase_2.20.1                    
[11] BiocGenerics_0.6.0                 BiocInstaller_1.10.3              

loaded via a namespace (and not attached):
[1] stats4_3.0.1 tools_3.0.1

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