Dan Tenenbaum | 7 Nov 07:29 2013

Re: unable to install \"ALL\"


----- Original Message -----
> From: "xia yuan [guest]" <guest@...>
> To: bioconductor@..., summerxl@...
> Sent: Wednesday, November 6, 2013 10:23:03 PM
> Subject: [BioC] unable to install \"ALL\"
> 
> 
> unable to install "ALL",please help me .
> 
> 
>  -- output of sessionInfo():
> 
> output:
>  biocLite("ALL")
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version
> 3.0.2.
> Installing package(s) 'ALL'
> trying URL
> 'http://bioconductor.org/packages/2.13/data/experiment/bin/windows/contrib/3.0/ALL_1.4.16.zip'
> Content type 'application/zip' length 11415170 bytes (10.9 Mb)
> opened URL
> downloaded 72 Kb
> 
> Error in read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package",
> "Type")) :
>   cannot open the connection
> In addition: Warning messages:
> 1: In download.file(url, destfile, method, mode = "wb", ...) :
>   downloaded length 73962 != reported length 11415170
> 2: In unzip(zipname, exdir = dest) : error 1 in extracting from zip
> file
> 3: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package",
> "Type")) :
>   cannot open compressed file 'ALL/DESCRIPTION', probable reason 'No
>   such file or directory'
> 

Sounds like the download is not working. Are you behind a proxy or firewall?
Try starting R like this:

R --internet2

and then running:

biocLite("ALL")

Dan

> 
> --
> Sent via the guest posting facility at bioconductor.org.
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@...
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>

_______________________________________________
Bioconductor mailing list
Bioconductor@...
https://stat.ethz.ch/mailman/listinfo/bioconductor
Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor


Gmane