CellML & OWL

Hi Sarala,

Since it's been awhile, thought I'd inquire about the status of this  
work and if you might have any draft papers, etc, you'd be willing to  
share yet?

thanks, Randy

Begin forwarded message:

>
> Message: 1
> Date: Sat, 6 Sep 2008 07:50:11 -0400
> From: Randy Heiland <heiland@...>
> Subject: [cellml-discussion] CellML OWL work in progress
> To: sarala.dissanayake@...
> Cc: cellml-discussion@...
> Message-ID: <8DDDAA42-0C3C-4B4D-AFC5-DAEF007DFEAB@...>
> Content-Type: text/plain; charset="us-ascii"; Format="flowed"
>
> Thanks for the reply, Sarala.  I/we look forward to your drafts.
>
> best, Randy
>
> Begin forwarded message:
>
>> From: cellml-discussion-request@...
>> Date: September 4, 2008 8:00:01 PM EDT
>> To: cellml-discussion@...
>> Subject: cellml-discussion Digest, Vol 50, Issue 4
>> Reply-To: cellml-discussion@...
>>
>> Send cellml-discussion mailing list submissions to
>> 	cellml-discussion@...
>>
>> To subscribe or unsubscribe via the World Wide Web, visit
>> 	http://www.cellml.org/mailman/listinfo/cellml-discussion
>> or, via email, send a message with subject or body 'help' to
>> 	cellml-discussion-request@...
>>
>> You can reach the person managing the list at
>> 	cellml-discussion-owner@...
>>
>> When replying, please edit your Subject line so it is more specific
>> than "Re: Contents of cellml-discussion digest..."
>>
>>
>> Today's Topics:
>>
>>  1. CellML OWL work in progress (Sarala Dissanayake)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Thu, 04 Sep 2008 20:32:33 +1200
>> From: Sarala Dissanayake <sarala.dissanayake@...>
>> Subject: [cellml-discussion] CellML OWL work in progress
>> To: CellML Discussion List <cellml-discussion@...>
>> Message-ID:
>> 	<20080904203233.ui1ruzjkoc4oc00s@...>
>> Content-Type: text/plain;	charset=ISO-8859-1;	DelSp="Yes";
>> 	format="flowed"
>>
>> Hi Randy and Ely,
>>
>> I'm developing a framework for annotating and visualizing CellML
>> models. A solution has been developed that involves:
>> - an ontology for storing CellML models in OWL format (CellMLOWL) and
>> a set of rules for binding these CellMLOWL instances to CellML  
>> models.
>> - an ontology which represents biophysical and biological concepts
>> that are covered in CellML models (CellMLBio) and a set of rules for
>> binding these concepts to CellMLOWL models;
>> - a specification for building visual templates that support a visual
>> language that can be used to represent all biophysical and biological
>> processes covered in CellMLBio ontology and the rules for binding the
>> visual language to concepts within the CellMLBio ontology;
>> - a visual editing tool, that combines the visual language and
>> ontologies to visualize CellML models.
>>
>> I'm currently writing up my thesis and 3 papers. I should be able to
>> make these available to you in draft form soon.
>>
>> Cheers,
>> Sarala
>>
>> ----------------------------------------------------------------
>> This message was sent using IMP, the Internet Messaging Program.
>>
>>
>>
>> ------------------------------
>>
>> _______________________________________________
>> cellml-discussion mailing list
>> cellml-discussion@...
>> http://www.cellml.org/mailman/listinfo/cellml-discussion
>>
>>
>> End of cellml-discussion Digest, Vol 50, Issue 4
>> ************************************************
>
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL:
<http://www.cellml.org/pipermail/cellml-discussion/attachments/20080906/7a579454/attachment.html 
> >
>
> ------------------------------
>
> _______________________________________________
> cellml-discussion mailing list
> cellml-discussion@...
> http://www.cellml.org/mailman/listinfo/cellml-discussion
>
>
> End of cellml-discussion Digest, Vol 50, Issue 6
> ************************************************